Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_39432 |
Symbol | |
ID | 7195149 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011687 |
Strand | + |
Start bp | 508668 |
End bp | 511196 |
Gene Length | 2529 bp |
Protein Length | 791 aa |
Translation table | |
GC content | 50% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002183369 |
Protein GI | 219126239 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.810038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGATTC CTACTGTCTT AAGTTTTCTC TACGTTGGCA ATCTCCTCCG TGATGCCCAC TGCAGTCCCT TACCCGAGCT CTTCGCTGCC AAGTCCATGG AAGAAGTCGA AGCCCTCATG TCCAAGACAA AGCAACGCCC CGCTCACGAA GTTCTCCGTG GACGACGTCG TCTTCAAGAC GGAACTCTTG AAACTTCCAA CCACATTCTT GCTGACAGGT TTGGCGGAGA AGCTGGCTTT TTCCATTCTG TTGCTTCCGG TGATCCGTTG GCAGATGCAG TCATCATCTG GACGCGTTAT ACTCCCGTCA ACGTCGACGA TGAAATTACG TTGGAGTTTC GTATGGCTGC TATTGATCCT AATCTGGAGG TCAACGCGCA CCTGGATCCT ACACTCAATG AAAACATTAA GCGTGGCAAG GTCACGGTCA CTGCTGCGTC TGACTTCACT GCCAAGATTG ATGTGACGGG ATTGCCTTCC AACACGCAGT TTGTGTACGT CTTTTCCGAC GGACAGCAGG TTTCCGATAT CGGTTTGACG AAAACCGCCC CGGCCCCGGG GGACGAAGAT CCTGATCTCA TATACGCTTT TTTCTCGTGC TCCCACTTTA CTAACGGTTT CTTCCACGCC TATGACGTTG CTTCGACAAT CCAAGATTTG GATCTGTGGA TTCACGTTGG CGACTATTAC TACGAGTATG GCCTCTTCGA CACGTATGCA CGCGAAGCAG CTGAGCAACG CGATCAGTTT GTTTTGCCTA TTTGGGAAAC AATTGACTTA CAAGATTACC GCAATCGTCA TTCGACACAT GTGGCGCACG ATGAAGGTCT TCGCAATTTG CGGCGGCGTG CTCCCATGAT TGCCACGTGG GACGATCACG AGACCACCAA CGACAGTTAT GGAAACGTCA ATCAAGGAAC TGGAGCGGAG AACCACCAGG AAACTTGCCT CGCTAACGCT ACATCACCTG ATGCCGACAA AGCAGCTGCC CAATGCGACC GACCGGAAGG TGATGCGGTG GAACGCTTTA CAGCTGCCGC CCAGGCGTAT TGGGAATGGA TGCCTATTCG ATACGTCGAA GGTACCATGG GCGAGATTCA GACAGGAACG TTGACCCAAA TTATTGAATG GGGCGACTTG GCCACCATAG CTTCCTTTGA TACGCGCATG AGCTTTCGTA CGGAAGAGTC CACGGGAGCG TCTGGTAAGA AAGGACATCC AAGGACCATG AAAACTTTCC AAAATATTGG ATATTGCTCT CACATAAGCG CTCGACTCAT TTCTACTCTA CAGCCTTTGC AACGTACGCC GCTGTAGGTG CGGTGAACAC AAATGTGAGC TCGTACTCCG ATCCGAGCTC CGATGCCTAC GCTGCTATCC AGCAAATCCG AGAAAGCGAT CGGGGAAGCC GACTGAACGA GAGCTTCTCC ATGCTTGGTG ATTATTTCGA CACCTTGGAA GACGTCTTTG AAGCTTCCAA GGCGGCAGGA AAACCTTGGC AAATCTGGGC TGCAAACACA ATGATGGGTC ACTATGTCTT ACCTGACGCG GCACAGTTTT ATTTGGACGC ACCCGAGGAG GTTCAGGCCA TCATTCAGAC ATACTTCGAT GCCTTCATGC TTTCCGAAGC CGCCTTAACT GCCCGACTGA TTTCGGCTCT ACGCGTTGCC GACATTGAAT GGAACCTCGA CGACTACGGT GGTTTTTACG CTGAACGCGC CAAGATTACA GAAATGGCAA AGGCCTCGAC CAATAACATG GTAGTACTGG GAGGAGATCT ACACGACGCA TTTGCATGGG TGCTTGTTGA GGGAGGGGAA GTTGAGGGTG CCCCGGTGGC TATCAATCTC GGCTGTCCAA GTGTGACTTC CCCAGGGTTC AAAAACGCTT TCTTACCAGT GTTCAGTCCA ATCTTGGAAG CCATTGGGGG CGAAGACGTA GCCATTGATA TCATGAACAG GGGTTACGCA CGTGCTAATC CAAACCTCAA ATTTTCTGAT ATTGGGAAGA AGGGCTTTGT TGCCATTAAA GCAACCATGG TACGTTGATC TTGCTTGGAT TTGACCATTG ATTCATCAAC ATCTCACAAT AGACTTTCTC CAGGACACAC ACACTGCCGA ATACATTGGC TTCTCACCCG AAACACTGCT GACCGACTTT GCAACTGCTC GCACCGATGG AGCAATCACG GCACCATTTG AGTGTCAAAT ATCACTAACC ACGCAATCTG ACGTTCCCGG GTCTCTTGAG CCTAGTGAGA CTTGTTCAGC CATTGCGTTT GACAATGAGC GACCTGCCGT TTATGATCTT CCTGTTCCAT CGCTTGACAA TATGCCTGAA GGCGACGCAC TCACTGTTTG TGGTATGATT GGTTGCGCGT TTGATGCCTC CACTGAGCCG ACCGATAGCG CTTCAACGGT TACGCCTACT GCACCAGCTC CTGCTCCTGC ATCGAGCTCA ACCTTAAGTA TTGGTCGCTC AATGGGCCTT GTTACCGGTG TCCTATTGCT TATTGTTACT TTATTGTAA
|
Protein sequence | MKIPTVLSFL YVGNLLRDAH CSPLPELFAA KSMEEVEALM SKTKQRPAHE VLRGRRRLQD GTLETSNHIL ADRFGGEAGF FHSVASGDPL ADAVIIWTRY TPVNVDDEIT LEFRMAAIDP NLEVNAHLDP TLNENIKRGK VTVTAASDFT AKIDVTGLPS NTQFVYVFSD GQQVSDIGLT KTAPAPGDED PDLIYAFFSC SHFTNGFFHA YDVASTIQDL DLWIHVGDYY YEYGLFDTYA REAAEQRDQF VLPIWETIDL QDYRNRHSTH VAHDEGLRNL RRRAPMIATW DDHETTNDSY GNVNQGTGAE NHQETCLANA TSPDADKAAA QCDRPEGDAV ERFTAAAQAY WEWMPIRYVE GTMGEIQTGT LTQIIEWGDL ATIASFDTRM SFRTEESTGA SAFATYAAVG AVNTNVSSYS DPSSDAYAAI QQIRESDRGS RLNESFSMLG DYFDTLEDVF EASKAAGKPW QIWAANTMMG HYVLPDAAQF YLDAPEEVQA IIQTYFDAFM LSEAALTARL ISALRVADIE WNLDDYGGFY AERAKITEMA KASTNNMVVL GGDLHDAFAW VLVEGGEVEG APVAINLGCP SVTSPGFKNA FLPVFSPILE AIGGEDVAID IMNRGYARAN PNLKFSDIGK KGFVAIKATM DTHTAEYIGF SPETLLTDFA TARTDGAITA PFECQISLTT QSDVPGSLEP SETCSAIAFD NERPAVYDLP VPSLDNMPEG DALTVCGMIG CAFDASTEPT DSASTVTPTA PAPAPASSST LSIGRSMGLV TGVLLLIVTL L
|
| |