| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_39392 |
|---|
| Symbol | |
|---|
| ID | 7195129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011687 |
|---|
| Strand | + |
|---|
| Start bp | 381452 |
|---|
| End bp | 385502 |
|---|
| Gene Length | 4051 bp |
|---|
| Protein Length | 1324 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183352 |
|---|
| Protein GI | 219126204 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.192889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACA AGGTAACTGG CGCGGCATCG GAGAATGGCG ACGAACCCAA CAGCAACACT
GGCAAAGGCA CCAATAAACC GAAAAGGCCC AGCCCCACCA ATTTCGGTCG CAGCTCTCGT
CATGCTTCCC ATCCCAGTCG CGGTGGCGGA GCACAGCGCC GAGTGTCGTT GTATGAAAGC
AGCAGCAGTG CCATCAGCGC GTTGAGCGGC AGTACCGGCG ACGACGATGA CGACGATTTT
GACTTTTCCC ACATCGCTCC GCTCGGTCGC TCGAAAGGCG AACGGACGAT CAGCACTACC
ATACGCCTTT CCAAACAGGG CTTTCGACAC AAGCGGACCG ACAACTTCGC TGTTCAATCG
ATCCGACGGG GCAGCGAAGA CTGGAAAAAT CTGATCAAGC CATTCGTGGC CGATTTGGTC
TTTCGCTCGC TCATTTGCCG CCGTTTTCAG TCGGAAGTCT CGTTTAGACC GTACACCGCC
CACGCTGCCG TTCTCTTTAT TGATTTATCC AGCTACTCCA AAATTACCAC GGCCATTGCT
CATCGCGGTG CGCACGCACT CAGCTCTATC GTCAACGCCT ATTTGTCACG CCTGCTCCAG
TTTGTGCACA GCCACGGTGG CGACGTTGTC AAGTTTGCCG GGGATGCTGT GCTTGTCGTG
TGGGAAGGAG AACAGAGCGA TTTAGCCATG AATGTTCTTT GTGCAGCAAG ATGCGCGTTA
GAAATGCAAA AAACGGCCGG GTCGCATCCG ATAGACGGTA GTTCCATGAT ATTTCAAATA
CATTGTGGAT TGAGTTGCGG ACGTATCGAG TCGGAAATTT TTGACGCTCC GACACACGTG
AACATGCAGC GTTACTATCA CGCTGTTAGT GGCGAAGCAC TGTTGGAAAT CAGTGAGCTT
GTGGATTTGG CATGTGCGGG GGAAATTTGC GCATCCGAAG CATGTCTCGG GCTCTTAGGC
AGCCATGGAC GGTACCGTAT TATCGATCTC GCCAAGCAGA CCGAAGTGGG TAAATTTGGC
ATGGGAAAGA TTTTGACCCA TCTAGATGTG GAGGAGTCCC TATCAAACGA GATGGAACTT
CACATTGAAA GTACTCTCAT GGATCGTATG GCGCGACGAA ATAAGCATAT TGAAGAGAAT
TTCATTCATC CAAGTGTTAT TCGCCAACTC AACCACGGTG GATTGTCACC AACACAGATT
GCGCAGATGC GCAGTCTTTG CGTTCTATTT ATTGCTATGA CTTCCCATGG TAGTGCAGTG
AATTGGTTGA TGGAAGTTCA AGGGGTGTTA GACAAGTACC GCTGCCCCAT TGTACAAATC
ATCGACGACG ACAAGGGCGT TCACGTTACC GCAGCCATCA ATCTTTACGA AGCAGTTCCA
GAAGCCAGTA TTCTAGGTCT GGATCTTTGC AAAGAGCTGG TCGACAAGCA CGTTGGCTGT
GCGATTGGAA TGGCTGCGGG AGCTACATTT TGCGGCGTCA CAGGCTCGAG TTCAATCGCC
TGTCGCTGGG ATATTACCGG AGGCCCTCCC GTTCGAGCCG CGCGTCTCAT GCAATTCGGT
ATGCAATTTG GTCACGAGGT TGTTCTGGAT CAATCAATCT ATGACGACCC AGTGGCAGCA
GTCCGCATGG TTGCGTTAAA CGCTGGAATC TACATCAAAG GAACGGATGG GGTGAGTCCA
ATATACACAC TCTCCGAGTC TACAGACTAC TCAGCATTTC GAGTATTAGA GACGGTCCAT
GGCGCAGTAC ACGACGATGT AGTCCGGAAA ATTCAAAAGA TGATTAACGG AGAAAGCACT
CGGTGCGCGT GTTTAGTCAC CGGGCCAACG CTCTCTGGTA AGAAGATTGT TTGTCAGAGG
GCGGCCGGCT ACGCTGACTT GGTTCCTTAT CTCCACGTTT GTGAAGAAAA TAGCGGCCTA
TTACAACTGG CGAAAACGAT GGCCACTTGG TTCAAATATC TTGATGACGA CGTCGTAAAG
CGTGGAGCAA AGGACGTCCT TGACTACTTG GAGAAAGGCC ATTGGACAAG GGCGCACGAT
GAATGTGTCC GACTTGTCAC TTTGATCATC GACAAAGGAA TGAATGCTTG TTTCGTCGTA
GATCGAATCC AGTTTCTAGA CGAGTTTTCG TTTTCGCTCA TCCGTGAGTG TCTTCGAGGA
AGAGCAAAAG TCGATCGCCT ATCGAGCCGC CTCTCTGTCG GATCCGAGTC CTCCGATGGT
AACGCAACTG GACGTATTTG CTTTCTTTGC ACGCACGTGC CCCTCTACAA CTGGATGTCA
GCAACGGATA TCGTGGAACA TATTGCGCGT TCGCACCAAA GGATAAGAAT TCCGATTTTG
ACTGTGGCAC AAACAGATAT AGAGTCCCTT CGTACTATGT TTCGAGATTT GGCTGACATG
AATGTGAGCG ATCGTTGGCT CACTACGTAT GCGCAAGGTT CCGGATATTG TGCTGGATAT
TTTGTAAGCA TACTCGTTTC TGAAATTGAG AGGGATTTGA CGAGAACTGA AGCTGATCAA
TGTATTCTTC TTCTTTTAGG TTGAACGATC AGCAGCGTCC AGAATCTTAT CTGCCCAACT
ATGGAATGAA GGAAAACCCG GCTATGCTGT GACGACGGAG GACATCACCC TGTACATTCC
TCCAGGTCTC ATGGGAAAAA ATTTACACAT GACAGTTCAA CAAACATCAG CAGAGATTGT
TATGAGATTT TCACAGGTAT TCGATGAGCT TCCACCCCTC TTTCAGACTT TAGCAAAGAT
CCTGACGATT GCGACCCGAA GGAAATTTTT CAAGCTACCT CGCACCATTC TTTGGGAGGT
ATTGAATGAT TTGGTGTCGG AAGGCGTAGA TTCTGAGCCA ATGGCTGCTG TCTTGAACGA
ATTGGTAGAT ATGTTTCTGT TGAAGATTGA ACAGGTAAAA AACGAAGAGG TGGTGTCGTT
TCTTAACCCT GCCTTTCTGG ATATTATTAT TGACGTTTGC ACCCCTGTGC AAATCCGAAG
TATCGCGACA GCCCTTATCG AACGCCTTGA ACCAATACTT AAAAGGGACT TCCGAATCCC
TCTCGTCATT GCAACGCTCC ATGGGATGCT TGGGCAACTA GAATCGATGC AGAGACACAT
GTGGTCCGAA GGCTTCAAGG TACTCCTGCA AGAAGGCAAA GACTGGCCCG AAAGCGAAAG
GATGCGGTGG TGTGAATTGA TTCAAGACGA AATTTCAGCT GCAGGATTTA ATGTTAACGA
GATCCTCGCT GGTCAAGCGC TCTGTCAAAT ACCGGCAAAG AAAGCTATTA GCCATCGACT
GCCTATGCTC AAAATATATC AAGGACCGAT TACGATTGGA CCTATGAGTC ACGCACTTGG
AGTTCTTTTT ACAAACATCT TTCATGAATA CGGCGTATTC CATGGTGCTC GAAAGTCTTC
AGTTTGTCGG CTCAGAAGAT CAATGGCTAG TTCATCCAGC AGATACTTAC GCCAGATGGA
ATGCTTGGAA AATTTTCTGG ACGGGTACGG ACTAAGTATT TCACGTGAAG AAAAGGAAAG
AGAACGCGAA ATAATCACGG CTCTGGCGAA GCCTGCCAGC CGCGAAGAAG ACGCTGTAGC
AAAAGCTTTC GTTGTACTCG ACGACTATAT TCCTCAATTT ATCGAACCAC GGATGGAGCG
GCTCTATTCT CTAGTTGCAA AACTTAGAGA GGAAGGGATT CCTGAGGTCG TCATGAATGC
GCAGCCTGCC ATACGGAGAG CATATGAAGC ACTGCAAGTC CCAAAAAACC GGAACGATGC
TGCCCAGGAT GCGCTGATGA CTCTTGCCAC GTTAAATTGG AAGCCTAAGC CGGTTCCGGA
GCAACTCTGC CTTATCTATT ACCAAACTGT TGCTCGACTT CGCAACAAAG TGCTAAAGCG
CTTGACACCT AAGCAGTTGG TTGGCTTTCG ACATCAGCAA TCAGTTGACG ACCTGGAGGC
GTTCTTGGTC GTCACACCTC TTCTGTACCG ACTCCAAGCG AAAAACCTTC AGGGCATGAA
GAGATCGACG AGCACTGATT TTTACGAGTG A
|
|---|
| Protein sequence | MKDKVTGAAS ENGDEPNSNT GKGTNKPKRP SPTNFGRSSR HASHPSRGGG AQRRVSLYES
SSSAISALSG STGDDDDDDF DFSHIAPLGR SKGERTISTT IRLSKQGFRH KRTDNFAVQS
IRRGSEDWKN LIKPFVADLV FRSLICRRFQ SEVSFRPYTA HAAVLFIDLS SYSKITTAIA
HRGAHALSSI VNAYLSRLLQ FVHSHGGDVV KFAGDAVLVV WEGEQSDLAM NVLCAARCAL
EMQKTAGSHP IDGSSMIFQI HCGLSCGRIE SEIFDAPTHV NMQRYYHAVS GEALLEISEL
VDLACAGEIC ASEACLGLLG SHGRYRIIDL AKQTEVGKFG MGKILTHLDV EESLSNEMEL
HIESTLMDRM ARRNKHIEEN FIHPSVIRQL NHGGLSPTQI AQMRSLCVLF IAMTSHGSAV
NWLMEVQGVL DKYRCPIVQI IDDDKGVHVT AAINLYEAVP EASILGLDLC KELVDKHVGC
AIGMAAGATF CGVTGSSSIA CRWDITGGPP VRAARLMQFG MQFGHEVVLD QSIYDDPVAA
VRMVALNAGI YIKGTDGVSP IYTLSESTDY SAFRVLETVH GAVHDDVVRK IQKMINGEST
RCACLVTGPT LSGKKIVCQR AAGYADLVPY LHVCEENSGL LQLAKTMATW FKYLDDDVVK
RGAKDVLDYL EKGHWTRAHD ECVRLVTLII DKGMNACFVV DRIQFLDEFS FSLIRECLRG
RAKVDRLSSR LSVGSESSDG NATGRICFLC THVPLYNWMS ATDIVEHIAR SHQRIRIPIL
TVAQTDIESL RTMFRDLADM NVSDRWLTTY AQGSGYCAGY FVERSAASRI LSAQLWNEGK
PGYAVTTEDI TLYIPPGLMG KNLHMTVQQT SAEIVMRFSQ VFDELPPLFQ TLAKILTIAT
RRKFFKLPRT ILWEVLNDLV SEGVDSEPMA AVLNELVDMF LLKIEQVKNE EVVSFLNPAF
LDIIIDVCTP VQIRSIATAL IERLEPILKR DFRIPLVIAT LHGMLGQLES MQRHMWSEGF
KVLLQEGKDW PESERMRWCE LIQDEISAAG FNVNEILAGQ ALCQIPAKKA ISHRLPMLKI
YQGPITIGPM SHALGVLFTN IFHEYGVFHG ARKSSVCRLR RSMASSSSRY LRQMECLENF
LDGYGLSISR EEKEREREII TALAKPASRE EDAVAKAFVV LDDYIPQFIE PRMERLYSLV
AKLREEGIPE VVMNAQPAIR RAYEALQVPK NRNDAAQDAL MTLATLNWKP KPVPEQLCLI
YYQTVARLRN KVLKRLTPKQ LVGFRHQQSV DDLEAFLVVT PLLYRLQAKN LQGMKRSTST
DFYE
|
|---|
| |