Gene PHATRDRAFT_29887 details

Gene Information

• Locus tag: PHATRDRAFT_29887
• ID: 7195127
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011687
• Strand: +
• Start bp: 366536
• End bp: 368589
• Gene Length: 2054 bp
• Protein Length: 564 aa
• GC content: 51%
• Product: predicted protein
• Protein accession: XP_002183349
• Protein GI: 219126197

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GCGCACGCTC GTCAGAACGA ATAGGCCTTG TCCGATTTAG GGTGACGACA ACTGAAGCTC 
CTTTGCCTTC CGAACGAACT GCAGCACTCT AACTCTACTC GCATCTACCT CTACTCGCCT 
ACGCAGCCTT CTTGACAATG AGCGGTATCG ACAATGAGGG TTCGACGCCG TCTCCCACAA 
ACACTCTCGT GACGGCCTTG TTGACCGACA TGTATCAAAT ATCCATGACC TATGCGCACT 
GGAAAAATGA TCGAGCCGAT GATGAATCTG TGTTTGAGCT CTTCTTCCGC AGGAATCCCT 
TCGGTGGAGA ATACACGATC TTTGCCGGTC TTGACGAATG TCTCAAATTC ATGGCGCACT 
TCAAATTTAC ACAGTCCGAT GTTGACTATC TCAAGACAAT ACCGTCAATG AAAGGTTGTG 
ACGATGCTTT CTTCGACTGG CTCTTGCAAG TCGACACATC CAAGGTCAAA GTTTACGCCA 
TGCGGGACGG ATCCGTCGCC TTTCCCCGTA TGCCACTTCT CATGGTCCAA GGTCCACTGG 
GCATCGCCCA ACTACTCGAA ACAACGCTAT TGACACTCGT CAATTACCCT AGTTTGATTG 
CCACCAACGC ATCCCGGATG GTCTTGGCCG CGACGGAACG TCGTGAAGTG TCCGAAAGCC 
TGCCCGCGCA ATGTCGTCAA ACCCCCGTCT GTGTCGAGTT CGGTTTGCGG CGAGCTCAGG 
GTCCCGACGG GGGATTTAGT GCGAGCAAGT ACGCGGCCAT GGGCGGATTC GTCGCCACCT 
CCAACGTACA AGCCGGAAAG CTGCTGGGTC TGAATGTGGC GGGCACACAC GCGCACGCTT 
TTGTCCAAAC CTACACCGGT CTCGAAGAAG TAAAGGGTCG CACCGTGACC GACAACACTG 
AGCAAGGCAC TGGGGAAAAT GTCGAAATTC TCCCCAAGGT TTTGGAATAC CGCCACAAAT 
TGGCGACAGA CAATCCAAAT TTCGGCACCA CAAACGACGG CGAACTGGCT GCGTTTATTG 
CCTACGCCGT CGCATTTCCA CACAATTTTT TGTGTCTTGT GGATACGTAC GAAACACTAA 
CGTCGGGCTT ACTAAATTTT GTCGTGGTCA CGTTGGTCTT GGACGATCTT GGTTATGTTC 
CTAAGGGGAT ACGACTTGAC TCGGGTGATC TAGCCTACCT CTCTCTGGAG TGTGCCAAGT 
GTTTCGCCAG CTTTGCAGAA AAACGTCCCT ATTTTCACAA TCTTTCGATT GTGGCAAGCA 
ACGATATAAA CGAGGATGTC CTACATGCGC TCAACAAGCA AGACCATGCC ATAACCGTCT 
ATGGAATCGG CACGAACCTG GTCACGTGCC AAGCTCAACC TGCCCTGGGC TGTGTGTATA 
AGCTCGTCGA AGTCGAAGGT AGACCGCGGA TGAAACTCTC ACAAGAAATC GAGAAAGTTT 
TGATTCCAGG CAGAAAGAAG CCTTACCGAC TGGTTGGTAG GGATGGCCGT CCCATTATGG 
ACTTACTGAC GGGCTATGAC GAATCTGAGC CTCAGACCAA CGTACGCATT CTATGCCGCC 
ACGCCTTTAT CGAACGCAAA CGAGCCGCCG TCACACCCTC CCGTGTTGAA GCTCTCCACG 
TCCTTGTCTT TGACCATGGC AAAGTTGTTC CGGATGCCAA CCGAAATCTG GATCAAGCCC 
GTGTGGCGGC GGCCGAGGAA TTGCAACGAC TCCGCCCCGA TGTGCGACGG TATTTTAACC 
CGACACCATA CAAGATTGCC GTAACCGACA GTTTGTTTCA CTTTTTACAT GAGCTGTGGC 
AATCGGAAAC ACCCGTACCA GAGTTATCAT AGTGACGAGA GCGGAATAGC AACGGCATTG 
TTTCGATGGT ATTGGAGTTT CTTGTACATG CTCCATGCTT TATATTGTCT GGTTCCAGTA 
AAACTGGAGG AAGGGAGACT ATGGCACAAC ATGATCCTTG TTTCCTGTGT CAGATCCGCA 
CAAGGCTACC GGACTTGCAT AAACTTTTTA CAGTTAATCA ATGTTTACTC TCCTGTCTTG 
CAGAATGAGA CCCG 

 

Protein sequence

MSGIDNEGST PSPTNTLVTA LLTDMYQISM TYAHWKNDRA DDESVFELFF RRNPFGGEYT 
IFAGLDECLK FMAHFKFTQS DVDYLKTIPS MKGCDDAFFD WLLQVDTSKV KVYAMRDGSV 
AFPRMPLLMV QGPLGIAQLL ETTLLTLVNY PSLIATNASR MVLAATERRE VSESLPAQCR 
QTPVCVEFGL RRAQGPDGGF SASKYAAMGG FVATSNVQAG KLLGLNVAGT HAHAFVQTYT 
GLEEVKGRTV TDNTEQGTGE NVEILPKVLE YRHKLATDNP NFGTTNDGEL AAFIAYAVAF 
PHNFLCLVDT YETLTSGLLN FVVVTLVLDD LGYVPKGIRL DSGDLAYLSL ECAKCFASFA 
EKRPYFHNLS IVASNDINED VLHALNKQDH AITVYGIGTN LVTCQAQPAL GCVYKLVEVE 
GRPRMKLSQE IEKVLIPGRK KPYRLVGRDG RPIMDLLTGY DESEPQTNVR ILCRHAFIER 
KRAAVTPSRV EALHVLVFDH GKVVPDANRN LDQARVAAAE ELQRLRPDVR RYFNPTPYKI 
AVTDSLFHFL HELWQSETPV PELS