Gene PHATRDRAFT_48313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_48313 
Symbol 
ID7203737 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011685 
Strand
Start bp93222 
End bp95294 
Gene Length2073 bp 
Protein Length616 aa 
Translation table 
GC content48% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002182895 
Protein GI219125244 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00387548 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CACCATCATC TATACTTGCG TCGTGAACAC ACCGTCTCCG TTTCAGTATG CTAGTAGACA 
AGCAGAATCG AGCGTACGTT GCATGTGCAG CATGTGTGCT GATTGTCTCG CAAGGAACTT
TGGCGAATGA GGAGTATCAA GTAGACGCCA TATCGGGAGA ATCCGTCTCG CTCTCCTTGT
TGGAATGTGG CATTTGGCTG GCACCCTCAA CCATTCCAGG CGCCGGGCTC GGCATGTATG
CTGGAAAAGA CTTCAAGTCT AACGAGAACC TGCAAGCTTC GGGTGACGTG ACGATCCCTA
TTGTAGACAT GCCGCATCAT CAGAACGGAG ACTGGAAATT TCTCTGGGAC GAATATACTT
GGAACGCGGT GAGTCTCGGC ATGATTCACG AAGGCTTGAT CGACGTAAAT GTTGCATCTC
CTGGATTTGG TTCCGCTGCA AATTCCTTCC TACCGTTAGT TAATGTGGAG GAGTGGAACC
CCGAATACGG CGCCTGTGGA CTTCATCGAT CTCGAGATCC TGGTGCGGGA GCCTTTTCAA
CCTACCACAA TCGCATTTCT ACCGCCAAGA GAGATATTGC CGCAGGCGAA GAACTCTTTG
TAGGTAAGAT TCCTATTTGA CTGTCATTAT CAACATGGTG GCCAATATGC ACAGGGAGGT
CTCTCACAAT TTTGTGCGGT GTCTGTAAGA CTACGGAAGT AACTGGTTTA CTAGTCGAGG
ACATCTAGGT CCCATCCCTC TTTACAAAGA CTTGGATCGG GCCACACACC TGTTTCAGCA
ATTTAAAAAC TTGAAAACAA AGTTGCAATC TCCCACTTTG AATACATTGC TGACAGAAGT
ATGGAATGAG TTTGTGAGTT ATAGCAACTA TGCAGATTCC AGAGTCATTG GTGCATTTCA
TCACCATGAC GAGACGGAGC TCCGGCGACT GGAAAATCAA ACTTTGACCG AGATTCGTTT
GCAGGATAGC TCGAGATCGA GAGAGTGGCT AGCTTTACAT GGGACATGTG GTGATCATAT
TGTCGCTGGC GTGTCGACCA TTCGTCAAGC CGGCCGTGGA GCTTTCGCGA CGCGTGATCT
CCCGGTCGGT ACAGTCGTAT CGCACATTCC TCTCATCCAT GTTCCGGACC GAAAACGATT
CGAAATGTAC AACCTCGGGG TTGAAGACGG AGAAAAATAT CCCGATAAAG CTCTCGGGAT
TTCTGGCTAT CAACTCCTAT TGAACTATTG TTACGGGCAT GCCAATAGTA CGTTGCTTTT
ATGTCCGTAC GGACCTATGG TAAGCCTCAA CATCCAAGTG CTGCTTGTCG TGTGTCCTTT
GATGCGTTCT CTCATCGTTA ACAGGTCAAT TTGGTGAATC ATAATAGGAC ATTGGCCAAC
GTGGCCCTTC GATGGGCAGA TCCACGCCGC GGAAATCACA TGCCGGCCCT TTTAAAGGGA
TCGATTGAGG AACTAGAAAA GGACAGGACG GCGAAGCTTG CCATGGAATT GGTTGCAACA
CATGACATCC AAGAAGGAGC GGAGGTCTTT ATGGATTACG GCGATGACTG GGAAAAAGCG
TGGCATCAAC ATATCAAGGA CTGGGAAGCA CCGCTAGGAT CCCATGCGTA CATATCGGCC
GACGATATGA ATGGTGACAA AGAGATGCAC CTAAGGACCG AGTTCGAATT GCTTGATAAA
CCTTACCCTC CCAATCTCGA ACTCAAATGT AACGAAGCTT TTGTTGACAG TGCCTGGGAA
AATGCCTGGA ATGCGGGTAC TTTAAGAACC TTTTTGGACT CTAAAAAGGA AGACTCCTTT
CTCCCGTGTG AAATTCTTCG CTCAGAATGG AAAAAGGGTA AGCTGCTATA CACTGCTGTA
CTGCATCAGA AGGGGGTGAC GGACAGTGCA TCGGATCGAA ATGAGCTACT CGAACATGTT
CCACAAGACG CGTTTCAGTT CCGAGACAAG CATTACACAA CAGACATGCA TCAAAAGAAC
GCATTTCGAC ACGACATTCG AATACCTGAT AACATGCTTC CGAGTGTGTG GATGAATCGA
AAAGAATAAT GTAAACATCA CATCAAAACG CCG
 
Protein sequence
MLVDKQNRAY VACAACVLIV SQGTLANEEY QVDAISGESV SLSLLECGIW LAPSTIPGAG 
LGMYAGKDFK SNENLQASGD VTIPIVDMPH HQNGDWKFLW DEYTWNAVSL GMIHEGLIDV
NVASPGFGSA ANSFLPLVNV EEWNPEYGAC GLHRSRDPGA GAFSTYHNRI STAKRDIAAG
EELFVDYGSN WFTSRGHLGP IPLYKDLDRA THLFQQFKNL KTKLQSPTLN TLLTEVWNEF
VSYSNYADSR VIGAFHHHDE TELRRLENQT LTEIRLQDSS RSREWLALHG TCGDHIVAGV
STIRQAGRGA FATRDLPVGT VVSHIPLIHV PDRKRFEMYN LGVEDGEKYP DKALGISGYQ
LLLNYCYGHA NSTLLLCPYG PMVNLVNHNR TLANVALRWA DPRRGNHMPA LLKGSIEELE
KDRTAKLAME LVATHDIQEG AEVFMDYGDD WEKAWHQHIK DWEAPLGSHA YISADDMNGD
KEMHLRTEFE LLDKPYPPNL ELKCNEAFVD SAWENAWNAG TLRTFLDSKK EDSFLPCEIL
RSEWKKGKLL YTAVLHQKGV TDSASDRNEL LEHVPQDAFQ FRDKHYTTDM HQKNAFRHDI
RIPDNMLPSV WMNRKE