| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_22325 |
|---|
| Symbol | |
|---|
| ID | 7203378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011684 |
|---|
| Strand | - |
|---|
| Start bp | 715431 |
|---|
| End bp | 717257 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002182748 |
|---|
| Protein GI | 219124935 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATTGTGACTC CGTCATTTTT CTTTCTCATA CTGGGAGCGC TCATGACAAG TGTTATCCCG
CATTACTACG CCATATGCAT CCAGCTTGTT GCAACATTAG ACGGTACAAG GGCAAAGGTA
TTCCAAGCTT TGACCGGGCT TGTCGTTTCG AGTACACTGG GTGCGTTGTT CACTGGTTGT
CGAGGAAGCT TATTTTGGAT CGCGGGAAGT CGAGCGAACT ACAATATTCG GGTCAAGCTA
CATCGTAGTC TTCTATTGCA GGAAGCTGCT TTCTTTGACT CCAATGAGAC CGGATATTTA
CTCAGCCGTC TGAATAGCGA TGTAAACAAG ATTGGAATGG TGATATCTTA TCATGTCAAC
GTCGTCTGTC GTCAGTTGGC ACAATTTATC TTTGGGAGTG CGTACCTCAT CAGAATTTCT
CCAAAGTTGT CTCTTTGGAC TTTTGCTGGA ATTGGTCTCG TTGCCTGGCT CTCGGCTATC
TATGGTGCTT TCAATCGTGT GTTGGCGCAG CGTGTTCAGG ACACCTTTGC GGACGCGACT
GCCGTGGCGG AGACTTCGTT CTCCATGTCG GAAACGATTC GTGCCTTTGA CGGAGTGGCC
GTTGAGTCAA ATAAGTACGA GACGGCGCAG AGCAAAGCGT TAGATCTTGA AGAAACGCAA
GCATGGGGAT ACGGAACGCA CAAATTTGTC TCAGACACTT TGCAAGGAAT TTTGCAAGTA
CTCCTACTTT TTGCTTGTTG GAGTATTGGT CGAACAGGAG GCTTACCCGC TGCTCAATTG
ACGACCTTTA TGTTCTACAC CAATTTTGTG CTCGAGTCAT CCAATGAAGT CGGTGATCAA
TGGGCAAAAA TTCAAGGCGC GATCGGGGCG AGTACCTCTG TATTTGATTT GATTCGAAGA
GTACCTTCTG TACGAGATCC GCCAATGAAG CTGGCGTTGC CCTCCGTCGA TCATTCTGTA
AAACATTTAA ATGGCTCAGA ATTGACGCCA ATTATCAACA TTCACAACAT GACACTAAAG
TACAGTGCAA TGGACTTACC CGCGCTGGAC TGTATCGACC TAAAAATCGA CGAAGGCGAC
CGAGTTGCAA TCGTTGGTCG AAGTGGAAGT GGAAAGTCTT CCATGCTCCG CGCTATACTC
AGGTTCTACG ATCCAACTTT TGGTTCGATT CAACTGGAAA GAACTCTTCT GACGGAAATG
TCAAGGAAGG ATATTGCCTC CAAGGTCTCC ATCGTTTCAC AAGAGCCGAG TCTGTTTCCT
ATGAGTCTAA TGGAGAATAT CTTGTACGGT ATTGAAAAGG ACGCCGTTGA TCCGAAGACT
GGTGAGCAAT GCTACAGTGA TGCTTATCGG GAGAGGACAT CCAAATCGTT GGAGCTTGCT
GGTCTCCCAG TGCAGCCGGG GAATGATTTA AACCTTTCAC TTGATACAAG GGTGGGAGAT
GGTGGACGTT CCCTTTCCGG CGGTCAGCGT CAACGGGTTG CTATCGCACG TGCCTTGATT
CGGCATCCCG AAGTACTTTT GTTGGACGAA CCGACAGCCG CCTTAGATTC CCAATCTGAA
AGGGCGGTGG TTGAAGCCTT GCTGCGAGCG ATGGAGCGCT CAAAGAGTAT GGTGATGGTG
ACACACCGAC TAGGTGTGGT TCGCTCATTG AATGTGAATC GAGTAGTGGT TATGGAAAAA
GGGAGGATTG TGGAAACGGG TCATCCAGAG GAATTGCTGT GCAAAGAGAA TGGCTGGTTC
GCTAGTCTAG CCCGAGAGCA AGGGATTGTG CCCGCTCATA AGTCGACCAA AGCAGTAGAA
GAATACCCTT AAAAAAAGTT CTTCTCT
|
|---|
| Protein sequence | MTSVIPHYYA ICIQLVATLD GTRAKVFQAL TGLVVSSTLG ALFTGCRGSL FWIAGSRANY
NIRVKLHRSL LLQEAAFFDS NETGYLLSRL NSDVNKIGMV ISYHVNVVCR QLAQFIFGSA
YLIRISPKLS LWTFAGIGLV AWLSAIYGAF NRVLAQRVQD TFADATAVAE TSFSMSETIR
AFDGVAVESN KYETAQSKAL DLEETQAWGY GTHKFVSDTL QGILQVLLLF ACWSIGRTGG
LPAAQLTTFM FYTNFVLESS NEVGDQWAKI QGAIGASTSV FDLIRRLALP SVDHSVKHLN
GSELTPIINI HNMTLKYSAM DLPALDCIDL KIDEGDRVAI VGRSGSGKSS MLRAILRFYD
PTFGSIQLER TLLTEMSRKD IASKVSIVSQ EPSLFPMSLM ENILYGIEKD AVDPKTGEQC
YSDAYRERTS KSLELAGLPV QPGNDLNLSL DTRVGDGGRS LSGGQRQRVA IARALIRHPE
VLLLDEPTAA LDSQSERAVV EALLRAMERS KSMVMVTHRL GVVRSLNVNR VVVMEKGRIV
ETGHPEELLC KENGWFASLA REQGIVPAHK STKAVEEYP
|
|---|
| |