Gene PHATRDRAFT_47970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_47970 
Symbol 
ID7203221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011683 
Strand
Start bp590423 
End bp592327 
Gene Length1905 bp 
Protein Length322 aa 
Translation table 
GC content54% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002182257 
Protein GI219123907 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000220023 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTAATCTTTC ATTGTGTTTC ACCATGACGA CCCCCCGTTT GTGTTTGACG CTCGTCCTTA 
CGTACGGCTA TATTATTCCC TTGACGACAG CATGGACGAG CCCGTTGCCA CTTTTTGGAA
GAGATACACG CCACGGCCTT CGGTGTTTGG ATGCGCTGCC CCCAGCCGCC GTTGAGGAGC
TCGGTGAGGC ACCGACGGCT CTTTCGCGCC GGGACTGGTG CCGACGCGCA TTCGGGGCCG
CCAGCGCACT CGGGATTACC GCTATTGTCC AGTACCCCAA TCCTTCCCAC GCGTTGGTCA
AGGGGTCCGA ACCGCCACCG CGTACCAAAA TGAACGACGG CAAACCCAAG TGTACCAACG
TGGACGAGTG CCAAGCCCAA GCCGAGCTGC GCGAACAGCA GCTCCGAGAG GAGGCCGCCG
CCAACGCTGT CCCCATTAGC ACGACTTCCG GAGGTATCCG CTTTCGGGAT CTTATAGTTG
GCGACGGGAC AACGGCGAAA GCCGGCGACG AAGTTGTTCT GCACTACAAA GTATTGAAAC
TCGGTAAACG CAGTTACGAC GGCATTTCGG GAGAAGGCAC CGTCGTTTTT TCGAGAGGGT
ACGGGCTAGA AGACGACGAA GCTAAACCCG GTGACAAGAA TTTTGTCACG ACGCTAGGCT
CCCTCAGCAA CATTGGTGCC GTTAACGATG CCGTTCCCGG CATGCAGACG GGTGGGACCC
GTCGCTTTGC GATTCTACCA CCCCAGGGAT GGCGCAAACC GTCCAAGATG TGTGACGGTG
GACCGGGTGG TAGTGGTTCG GGTGGAGACT TGCGGACGGA CTACGTTATT GTACCTACCG
CCACCATGGT GGACGCCGAA GTCTGTTTTG ATCAATCGAA ACAACCCTTT CCGACATCGT
ACGGACAACA ACGCCGAATG GCGCAACGCT TCGATCAGAG TCTCATTATG GAAGTACAGC
TAGTTGCGGT CAAGGCGGGA GGGAGCCTAT AAATTGCTAA GTGTAAACAG TTTATAGACG
CTACTGTAAG CAAAGCGAAA AGCTGTGTGT TCGCCGGACC GTGTTCGAGG GGTAGCTTGG
AGATCCACAG TCAAAAACTA CGAGGTGGAC TCCAATACCC GGAGAAACAG GTCCGTCTGT
CCTCCGAGGG ATTCAAAACC CAATCAGGTC GCCGGAAACA GAGTGACAAC TGGAAAGCCA
GACACACAAC CGTGGTTTTG CGCCATTGAC AGTGAGGAAT ATTACTGTTA CTGTTAGTGC
AGTACCGACC GACCGAAACA CAAAATCGAA AACTACCCGA GTACAGCACA TCGTCTATGA
TAAACCTAGG TGCTGCTAGC ACACATACTT AACTTACTCA CACACCTATA CCGAGCGGCA
AACACGTTGA AATTCAGCCG ACGCTTTAAG CCGAGACTCA AGCATGTACA AACTGCCTAT
AATGGCCGAC GAGAGGAGGA ATATCCGAGG CCGACAACGG TACAGCCGTC GTCGTCCATC
TTTCTCATCG TGGCTTACGA ATCCGTCTCT TGCCGTATTA TTCTTGTTTG GAATGATGTT
CTTATTCACT GGCAATGGAA TGCTTTGCGC GACGGCGATA GAGGCAACGT GGACCCCCAA
CGAGGATGGA GACGCTCCAC TGCCCTTGTC CAACAATCAA CGACAACAGT TACTTCAACT
GGAAGACACC ATTCGGAGTG CTCCCGACCC GCAGGCTACT TTGATGCAAG TAGCTCAATC
CAACGAAATG GACCCACAAG AATTGGTAAA TTTGCTCAAT CAGAATCGAA GGGAAATGCA
AGCCGCGGGA GCGTTACAAC CGCCCGGAAC GTCGGGACGG AATATTTGGA AGCTTGTTTC
TAGTATGGGA GTGGTGCTCG TACAGTCGGC ATCCAAACAT CCGAG
 
Protein sequence
MTTPRLCLTL VLTYGYIIPL TTAWTSPLPL FGRDTRHGLR CLDALPPAAV EELGEAPTAL 
SRRDWCRRAF GAASALGITA IVQYPNPSHA LVKGSEPPPR TKMNDGKPKC TNVDECQAQA
ELREQQLREE AAANAVPIST TSGGIRFRDL IVGDGTTAKA GDEVVLHYKV LKLGKRSYDG
ISGEGTVVFS RGYGLEDDEA KPGDKNFVTT LGSLSNIGAV NDAVPGMQTG GTRRFAILPP
QGWRKPSKMC DGGPGGSGSG GDLRTDYVIV PTATMVDAEV CFDQSKQPFP TSYGQQRRMA
QRFDQSLIME VQLVAVKAGG SL