Gene PHATRDRAFT_47886 details

Gene Information

• Locus tag: PHATRDRAFT_47886
• ID: 7203154
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011683
• Strand: -
• Start bp: 343064
• End bp: 345099
• Gene Length: 2036 bp
• Protein Length: 528 aa
• GC content: 46%
• Product: predicted protein
• Protein accession: XP_002182376
• Protein GI: 219124155

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0086312
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CATGTTTGGA CTTGATGGTT TTGGTGGCTC CCAAAGTGGG TTCGCGGTGG ACGGAGACAA 
AACTGGAGTA GTGATTGTAG AAGATTGTGT TATGTCTAGA ACAATTGCTG GCCTGTTAGT 
GGCCTATACT ATGCTCTTTT CCAATTGGTG AATACCAACC TGAAGCAGAC AAAGAGCTCC 
AGACAGTAAT TCTTAGACTA TTTTTTCTTT CCATGTTACT AGAACCATGG AATGGCTACC 
ATGGTTGCAC TGGCAAAGGA AAGTAGCGAC GGCTGACTTA CGTACCATTT GTGGCATCTG 
ATGACATGCC AAAGTGTCGC TTGTGGCTTT GAACACAATT CTAACAACAA TCGCTCTGAC 
TAGGCCATAG CTCTTGTGGC TATTGTCACC GTACTTTCAC AATTGGTGCC AGAAAATCTC 
AAACTGTCGT CGAAGTGAGA TTAACAGTAA TGGACATGAA CAATGATAGT TTTCAACCGT 
TGTCCAAGCG CCAGAAGACA TCTGATGTCG AGAAGAGCGA CGAAGACCTT TCAAATTTAG 
TTCATGGTGA TGAGTTTGCT CTTGTAGGCC GAGAACAAGA GCTGGATGCT CGGCGAAGAC 
GCGCAGACAG AAAACTACGG CTTCACAGTG CTCGGCAAAA AGAATCAGGT GAAGGAACAG 
ACAGAAACGA CGACACGGAC AAGGATTTCT TATTGCCTGT GAGATATGCT CAAAATGATC 
AGCTCCAGGC AACAGCAACT TTAAGCAACA AGGACATGGA AACAGTTTAT CAGCCGGTCG 
ACAAGGACAA TTTTGACATG TTTTCCAGCT CTCCGTCTCC GCAGGACAAT ATGGATTACC 
AAACGAACTC AGCGACATCC AAGTCGAAGC GAGGAAATGA ACAAGGGGAT TGGGACGACA 
GCGAAGGATA TTACAAAGCT GTAATTGGTG AAATTATTCG TTTAGAACAA ACGATAGACT 
CCGCTTCTGG CAATTCCAGC AGATCAGAGA TAAGCTTCCG AATTTCAGGA GTTGTTGGGA 
AAGGGGTCTT CTCCACCGTT CTCAAATGTA CAACTGTAAG CAATAGTAGC AGTATCCAGC 
TTCCTCCTAC AGTTGCCTTG AAGTTCATCC GGCACAACGA CACGATGGCG AAGGCCGCAT 
TGAACGAGGT GCAAACTTTA CAGCGCTTAA AGGGATGCGA CGGTATTGTT CCATTGCTGT 
TACCACTTAC AGAAACTCCG ATGGAACACC GAGGACATGT TGTCTTGGCG TTTTCATGTA 
TGGAATACAA TCTCCGAGAC GTGCTTCAGA AATTCGGGAA AGGTGTCGGT CTTTCACTAC 
AAGCAGTTCG ATCATATTTC GGCCAGCTTC TGGCTGCCGC AACGCATCTA AAGAAGAACA 
ACATAATACA CGCAGATTTG AAGCCGGATA ACATTCTCGT AAGCGCCGAT TTTTCTTTTG 
TTCAGCTTGC GGATTTCGGT TCAGCTATTG ATGCATCGGA GTCCCAACAA AACCAGCCGA 
CGCCGTACCT GGTATCACGT TTTTACCGCG CGCCCGAAAT AATTCTTGGT TTGACTCCGA 
CATTTGCGGT TGATTTGTGG AGCTTGTCGG TCACGGCAGC CGAGTTGTTT CTAGGAGAAG 
TTTTGTTCAA GGGGTCTTCA AACAATGACA TGCTCTACAG CTTTATGCAG CACATGGGGC 
CAATTTCCAA TCGCATTATC CGTCAGCATT TGGCAGGATG CCAGCGCTTT CCAATTTCGA 
AACAATTTTC TCAGGAAGGA GCAAGCTTCC TTTTTAAGCA GCAGACAACA GATCCCGTGA 
CTGGTCGGCA TGTACACAGG ATGTTGTCGC TTGCAACCTC AAGTAACGGA GGGAGGTTTC 
CGTCGGCCAC TCCTTTACAT CGCGTGTTGT TGAGGGCAAA GTCCACAAAA GACAATCGCA 
TTGTGGTCAA TCGATTTTCA GATCTTCTAG TGGGATGCCT CAGTCTGGAT CCGTCCAGAA 
GGATGAGTTT AAAAGAAACT TTGCAGCACT CTTTCTTCCA GCTTGAAAAC TCGTAA 

 

Protein sequence

MDMNNDSFQP LSKRQKTSDV EKSDEDLSNL VHGDEFALVG REQELDARRR RADRKLRLHS 
ARQKESGEGT DRNDDTDKDF LLPVRYAQND QLQATATLSN KDMETVYQPV DKDNFDMFSS 
SPSPQDNMDY QTNSATSKSK RGNEQGDWDD SEGYYKAVIG EIIRLEQTID SASGNSSRSE 
ISFRISGVVG KGVFSTVLKC TTVSNSSSIQ LPPTVALKFI RHNDTMAKAA LNEVQTLQRL 
KGCDGIVPLL LPLTETPMEH RGHVVLAFSC MEYNLRDVLQ KFGKGVGLSL QAVRSYFGQL 
LAAATHLKKN NIIHADLKPD NILVSADFSF VQLADFGSAI DASESQQNQP TPYLVSRFYR 
APEIILGLTP TFAVDLWSLS VTAAELFLGE VLFKGSSNND MLYSFMQHMG PISNRIIRQH 
LAGCQRFPIS KQFSQEGASF LFKQQTTDPV TGRHVHRMLS LATSSNGGRF PSATPLHRVL 
LRAKSTKDNR IVVNRFSDLL VGCLSLDPSR RMSLKETLQH SFFQLENS