| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_21970 |
|---|
| Symbol | |
|---|
| ID | 7202974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011683 |
|---|
| Strand | - |
|---|
| Start bp | 198131 |
|---|
| End bp | 199793 |
|---|
| Gene Length | 1663 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002182346 |
|---|
| Protein GI | 219124093 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00490278 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TCTACTGTTG ATATCAGTGA AGACAAAAAA CTAATGCTGG CAGTCATTGG CTCGAACGAA
ACATTGCGCT CTCTCGGTCC CGAGTCAAAT GATATAGCCC ACTTCGAGGC GACTGGACTC
GATGGCGGAG ACGAGTTCAC GTTCAAGGGA TGGGTGCAAC AAAAGCTCTT CCTTGGTATT
GAGCCATCTC CAGATATTAT AGCGATCGCA ACGATATACT TTGTGGAAGG CGCTTTGGGT
TTGGCGAGAC TGGCACAAAC GTATTTGCTC AAGGACGAGC TTGCACTTGG ACCGGCGGAA
ATGTCGGCAC TCACGGGGGC ACTGGTGTTA CCCTGGACTA TCAAGCCACT CTATGGATTT
TTGAGTGATG GATTTCCATT GTTCGGGTTT CGGAGAAAAA GTTATCTGAT TGTAGCTGGT
CTTAGTGGCG GGCTCTCTTA CTCTGTCCTT AGTTTGTCTG GCTTTTGGGA AAGCCTCGAC
AAGGGCGTTG CCATTAGTGG TACTGTTGGT GCATTACTAC TGAGTAGCGC ATGCATAGCC
ATGTCAGATG TTGTGGCCGA TGGAATAGTC GTGACTCGGA CTAGGCAGGC AAAAGATCCT
GCAATAGCAG GCGGTCTTCA GTCTCTGTGC TGGGGATCGG CGGCTGTCGG AGGTTTGTTG
TCGGCGTACT TTTCTGGAGC TTTGTTAGAA GTTATGTCTA TTCGGAGTAT CTTTGGTATT
ACAGCTGTGC TGCCATTTAT GGTCGCATTG ATAGCGCTTC AAATGGAAGA GAAGCCTTAC
GTAAAGGAAG AAGGGCACGA AGGATTGGTC ATGGGTGTCA AGGACCAAGC GAATGCTCTT
TGGGAGGCAC TCAAACAGCC TTCCATTTGG AAACCTACGC TGTTTTTGTT TTTATGGCAA
TCAACACCAA CATCCGATGG TGCGTTCTTT TATTTTATGA GCAATGATTT GGGTCTGGGA
CCGGAATTTA TGGGACGTGT TCGACTGGTT ACATCGCTCG CCACTTTGGG CGGAGTTGTC
GTATACAACC AATATCTGAA ACGAGTGCCC ATAAAATCCA TTTTGTTTTG GTCTACAATC
GCATCCTTCC CGCTCGGCAT GCTGCCCGTT CTACTTCTCA CCCACGTGAA TCGCGAATTG
GGTATTCCCG ATCAGGCCTT GATTTTTGGA GACGACATTG CCTTGGCGGC CCTCGGTGAA
ATCGCCTTTT TGCCGACTCT TGTACTGGCC GCTCGTCTTT GTCCACCAGG GGTCGAAGCC
GTATTGTTCG CCACACTCAT GTCGGTATTC AACGGTGCCG GCACGGTGGG AACCGAACTT
GGCGCTCTTT TGACCAAGTT GTTTGGTGTG ACGGATAGCA ATTTTGACAA CTTGGTGTGG
TTGACTGTCC TTTGTAACGT CACTTCTTTG TATCCACTTT TCTTTATCGG GTGGCTCGAC
AAGATAGGGG ATGTCTCCGA AGAGGAGATG GAAAGCAAAA AGGGTGTGAT TGAAACAACG
GCAAGAACTA AAGAAACGTA GAGGTAGATC AATAGGCCGC GAATGAAAGT GTTCGTAGTC
GCAATTAGAA GATCCGGTGC ATCGTGTGGT GTCTGTCACC CAGCTGCAAC TCTTTACTGT
TCACGAATGC CGATTTGTTG CTACCTCTAC TCGTACACTA ATT
|
|---|
| Protein sequence | MLAVIGSNET LRSLGPESND IAHFEATGLD GGDEFTFKGW VQQKLFLGIE PSPDIIAIAT
IYFVEGALGL ARLAQTYLLK DELALGPAEM SALTGALVLP WTIKPLYGFL SDGFPLFGFR
RKSYLIVAGL SGGLSYSVLS LSGFWESLDK GVAISGTVGA LLLSSACIAM SDVVADGIVV
TRTRQAKDPA IAGGLQSLCW GSAAVGGLLS AYFSGALLEV MSIRSIFGIT AVLPFMVALI
ALQMEEKPYV KEEGHEGLVM GVKDQANALW EALKQPSIWK PTLFLFLWQS TPTSDGAFFY
FMSNDLGLGP EFMGRVRLVT SLATLGGVVV YNQYLKRVPI KSILFWSTIA SFPLGMLPVL
LLTHVNRELG IPDQALIFGD DIALAALGEI AFLPTLVLAA RLCPPGVEAV LFATLMSVFN
GAGTVGTELG ALLTKLFGVT DSNFDNLVWL TVLCNVTSLY PLFFIGWLDK IGDVSEEEME
SKKGVIETTA RTKET
|
|---|
| |