Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_47407 |
Symbol | |
ID | 7202546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011681 |
Strand | + |
Start bp | 552541 |
End bp | 554499 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | |
GC content | 49% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002181581 |
Protein GI | 219122499 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGGCCG TGATATCCGG TCGGTTCCTC GTGCAGGGAG ACCGCAATCG CCATCGTGGC CGTCTCCTAG ATCCTTCCCC TCTTCTGATA TCGACGGAGC CACTTTCTTT CTGGGGAGGT ATTGATCCCT TGTCCGGAAT TGTGATTGAC TCGACCCATC CATTGGCCGG ACAGTCCGTC ACTGATACAA TACTCTGTCT ACCCTCGGGT CGTGGGTCCT GTACCGCATC TCAGGTACTA CTGGAGCTTA TTCTCAATGG CATTGCTCCT CGTGCAATTG TCCTACGTGA TGTCGACGGA TTAGCTGCGG TGGGGGCTTT GATTGCACAG GAGGTTTTCC TGGAGGCTTC AATGGATATT CTGCACATAG GAAAGGAAGG ATATCATGCG ATACTTTGTT CGTCAAACTC GCACGGTGTG ATATCTTCAA ACGGGGAGCT TGCTCTAAGT AGAGACGTCG AATCGCTTAC CCGGACGGTA TTCAAGCCGC ATACTATAGT AAAAAAAGCA ATTGATGCGT CCAATCTGTC ATTTACTAAC GAAGAACAAA AAATGTTGGA AGATTGTGAC TCTGAAGCAG CACAAATGGC GCTACGGGTC CTATTTCACT ATGCCCACAT GACGAGCCCC CCGAATACAG TACCGACATA TTTGAAAGTC ACCAAAGCGC ACATTGATGG ATGTACGTAT ATTGGCCCGG GAGGTCTCGC CTTTTGCCAA CGCCTTGTCA AAGCCAAAGG CCATGTTTCT GTTCCCACCA CCCTTAATTC TATGTCGGCT GATCGTCAAC GCTGGCAAGT CTTGGGTGTG CCGACGAAAT ATGCCCACAA TGCGATTGCG TTGGGTGACG CTTACCTGCA GCTGGGCTGT TTGCACTCTT TCACGTGTGC ACCCTATATT TTGAACAATC CACCCACGCT TGGTGAGCAT TTGGTATGGG GCGAAAGCAA TGCGGTTGTT TACGCCAATT CTGTTTTAGG TGCACGAACG GAAAAGTACG CAGACTATCT AGATATTTGC TGCGCTATCG CAGGGATGGT ACCTGCCGCC GGAGTTCATC TAGAAGAAAA TCGACGCCCT AGGATTGTTC TGGACGCGAC ACCTTTGGTA GAATCGCTTG ACCTGGCACT TGTAGACTTG GACATGTTTT TCCCTCTTCT GGGTCACTTA TGCGGATCCC TCTCTGATGG AAACGTTCCT ATTCTTTTGG GATTAGAGCC ACTGTCTAGC TCCATCAGTC TAGACCATTT AAAATCGTTT TGTGCGGCGT TCGGCACAAC TGCATCGTCT CCACTAATTC ATATTTCCAA AGTAACGCCA GAAGCTCAGG ATGAGGGAAT TGTAAAAGCC TGGATCCAAG CGTGCGGAGA TAAGACTGAA ACGATATCGA CTAGACAGTT GCGCAAGACT TTTGAGAAGC TCGATGGAGA TCGCGATGGA GATGGGAAGG TCAATCTTAT AGCTCTTGGA AATCCTCACT TATCTGTATC AGAATGCAGA GACTTGGTCA ATCTTATCGA ACTACCGCAT ATTTCTAACA ATCATAAGGT CAAGCATCCC GAAGTCCGTG TGATTGCTTG TATGGCTAGG TCTCTTCAGT TGATAGCGGA GGAAGCAGGG TATGTGGGAA AGCTTCGTGA CTTTGGGGTT GAATTCATCA ATGATACGTG CTGGTGCATG CTCCTCGATG AGCCTGTGAT CCCGATCGAT CCCAGCTCTA AAATTTTGAC GAACAGTGGC AAATATGCGC ATTATGGACC CGGTCTTACT TCCCGCAAGT TTCGTTTTGG GAGTACGAGT GATTGCGTGC AGGCAGCTTT CACCGGCGTG TATCCCAACA AGGTATTTTC GGATGTTTCT CCCAGCAGTT GGTTGATGAG TAGACCTCAG ATAATGCAGC GACGGACGTT CAAGACGTCG ATCCATAGCA TTCAGAGGAT CGTGTTACTT CTAAGATAA
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Protein sequence | MSAVISGRFL VQGDRNRHRG RLLDPSPLLI STEPLSFWGG IDPLSGIVID STHPLAGQSV TDTILCLPSG RGSCTASQVL LELILNGIAP RAIVLRDVDG LAAVGALIAQ EVFLEASMDI LHIGKEGYHA ILCSSNSHGV ISSNGELALS RDVESLTRTV FKPHTIVKKA IDASNLSFTN EEQKMLEDCD SEAAQMALRV LFHYAHMTSP PNTVPTYLKV TKAHIDGCTY IGPGGLAFCQ RLVKAKGHVS VPTTLNSMSA DRQRWQVLGV PTKYAHNAIA LGDAYLQLGC LHSFTCAPYI LNNPPTLGEH LVWGESNAVV YANSVLGART EKYADYLDIC CAIAGMVPAA GVHLEENRRP RIVLDATPLV ESLDLALVDL DMFFPLLGHL CGSLSDGNVP ILLGLEPLSS SISLDHLKSF CAAFGTTASS PLIHISKVTP EAQDEGIVKA WIQACGDKTE TISTRQLRKT FEKLDGDRDG DGKVNLIALG NPHLSVSECR DLVNLIELPH ISNNHKVKHP EVRVIACMAR SLQLIAEEAG YVGKLRDFGV EFINDTCWCM LLDEPVIPID PSSKILTNSG KYAHYGPGLT SRKFRFGSTS DCVQAAFTGV YPNKVFSDVS PSSWLMSRPQ IMQRRTFKTS IHSIQRIVLL LR
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