Gene PHATRDRAFT_47407 details

Gene Information

• Locus tag: PHATRDRAFT_47407
• ID: 7202546
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011681
• Strand: +
• Start bp: 552541
• End bp: 554499
• Gene Length: 1959 bp
• Protein Length: 652 aa
• GC content: 49%
• Product: predicted protein
• Protein accession: XP_002181581
• Protein GI: 219122499

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGGCCG TGATATCCGG TCGGTTCCTC GTGCAGGGAG ACCGCAATCG CCATCGTGGC 
CGTCTCCTAG ATCCTTCCCC TCTTCTGATA TCGACGGAGC CACTTTCTTT CTGGGGAGGT 
ATTGATCCCT TGTCCGGAAT TGTGATTGAC TCGACCCATC CATTGGCCGG ACAGTCCGTC 
ACTGATACAA TACTCTGTCT ACCCTCGGGT CGTGGGTCCT GTACCGCATC TCAGGTACTA 
CTGGAGCTTA TTCTCAATGG CATTGCTCCT CGTGCAATTG TCCTACGTGA TGTCGACGGA 
TTAGCTGCGG TGGGGGCTTT GATTGCACAG GAGGTTTTCC TGGAGGCTTC AATGGATATT 
CTGCACATAG GAAAGGAAGG ATATCATGCG ATACTTTGTT CGTCAAACTC GCACGGTGTG 
ATATCTTCAA ACGGGGAGCT TGCTCTAAGT AGAGACGTCG AATCGCTTAC CCGGACGGTA 
TTCAAGCCGC ATACTATAGT AAAAAAAGCA ATTGATGCGT CCAATCTGTC ATTTACTAAC 
GAAGAACAAA AAATGTTGGA AGATTGTGAC TCTGAAGCAG CACAAATGGC GCTACGGGTC 
CTATTTCACT ATGCCCACAT GACGAGCCCC CCGAATACAG TACCGACATA TTTGAAAGTC 
ACCAAAGCGC ACATTGATGG ATGTACGTAT ATTGGCCCGG GAGGTCTCGC CTTTTGCCAA 
CGCCTTGTCA AAGCCAAAGG CCATGTTTCT GTTCCCACCA CCCTTAATTC TATGTCGGCT 
GATCGTCAAC GCTGGCAAGT CTTGGGTGTG CCGACGAAAT ATGCCCACAA TGCGATTGCG 
TTGGGTGACG CTTACCTGCA GCTGGGCTGT TTGCACTCTT TCACGTGTGC ACCCTATATT 
TTGAACAATC CACCCACGCT TGGTGAGCAT TTGGTATGGG GCGAAAGCAA TGCGGTTGTT 
TACGCCAATT CTGTTTTAGG TGCACGAACG GAAAAGTACG CAGACTATCT AGATATTTGC 
TGCGCTATCG CAGGGATGGT ACCTGCCGCC GGAGTTCATC TAGAAGAAAA TCGACGCCCT 
AGGATTGTTC TGGACGCGAC ACCTTTGGTA GAATCGCTTG ACCTGGCACT TGTAGACTTG 
GACATGTTTT TCCCTCTTCT GGGTCACTTA TGCGGATCCC TCTCTGATGG AAACGTTCCT 
ATTCTTTTGG GATTAGAGCC ACTGTCTAGC TCCATCAGTC TAGACCATTT AAAATCGTTT 
TGTGCGGCGT TCGGCACAAC TGCATCGTCT CCACTAATTC ATATTTCCAA AGTAACGCCA 
GAAGCTCAGG ATGAGGGAAT TGTAAAAGCC TGGATCCAAG CGTGCGGAGA TAAGACTGAA 
ACGATATCGA CTAGACAGTT GCGCAAGACT TTTGAGAAGC TCGATGGAGA TCGCGATGGA 
GATGGGAAGG TCAATCTTAT AGCTCTTGGA AATCCTCACT TATCTGTATC AGAATGCAGA 
GACTTGGTCA ATCTTATCGA ACTACCGCAT ATTTCTAACA ATCATAAGGT CAAGCATCCC 
GAAGTCCGTG TGATTGCTTG TATGGCTAGG TCTCTTCAGT TGATAGCGGA GGAAGCAGGG 
TATGTGGGAA AGCTTCGTGA CTTTGGGGTT GAATTCATCA ATGATACGTG CTGGTGCATG 
CTCCTCGATG AGCCTGTGAT CCCGATCGAT CCCAGCTCTA AAATTTTGAC GAACAGTGGC 
AAATATGCGC ATTATGGACC CGGTCTTACT TCCCGCAAGT TTCGTTTTGG GAGTACGAGT 
GATTGCGTGC AGGCAGCTTT CACCGGCGTG TATCCCAACA AGGTATTTTC GGATGTTTCT 
CCCAGCAGTT GGTTGATGAG TAGACCTCAG ATAATGCAGC GACGGACGTT CAAGACGTCG 
ATCCATAGCA TTCAGAGGAT CGTGTTACTT CTAAGATAA 

 

Protein sequence

MSAVISGRFL VQGDRNRHRG RLLDPSPLLI STEPLSFWGG IDPLSGIVID STHPLAGQSV 
TDTILCLPSG RGSCTASQVL LELILNGIAP RAIVLRDVDG LAAVGALIAQ EVFLEASMDI 
LHIGKEGYHA ILCSSNSHGV ISSNGELALS RDVESLTRTV FKPHTIVKKA IDASNLSFTN 
EEQKMLEDCD SEAAQMALRV LFHYAHMTSP PNTVPTYLKV TKAHIDGCTY IGPGGLAFCQ 
RLVKAKGHVS VPTTLNSMSA DRQRWQVLGV PTKYAHNAIA LGDAYLQLGC LHSFTCAPYI 
LNNPPTLGEH LVWGESNAVV YANSVLGART EKYADYLDIC CAIAGMVPAA GVHLEENRRP 
RIVLDATPLV ESLDLALVDL DMFFPLLGHL CGSLSDGNVP ILLGLEPLSS SISLDHLKSF 
CAAFGTTASS PLIHISKVTP EAQDEGIVKA WIQACGDKTE TISTRQLRKT FEKLDGDRDG 
DGKVNLIALG NPHLSVSECR DLVNLIELPH ISNNHKVKHP EVRVIACMAR SLQLIAEEAG 
YVGKLRDFGV EFINDTCWCM LLDEPVIPID PSSKILTNSG KYAHYGPGLT SRKFRFGSTS 
DCVQAAFTGV YPNKVFSDVS PSSWLMSRPQ IMQRRTFKTS IHSIQRIVLL LR