| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_37493 |
|---|
| Symbol | |
|---|
| ID | 7202485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011681 |
|---|
| Strand | + |
|---|
| Start bp | 276885 |
|---|
| End bp | 280820 |
|---|
| Gene Length | 3936 bp |
|---|
| Protein Length | 1289 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002181522 |
|---|
| Protein GI | 219122376 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTC GCGCGTCACG ACGGATGGGG TCCGGTGTCG TCACGGCACC GTCCGGATCC
GCCGCGTCGC CGTTGACCGA ACTCAATTAC CTGTTGAGTC GGTGGGAACA ACGGATTGAA
CGCGTCCGCC AAGCGCAGCA GCGACAACGG GAGCAACCAC CGCCGCCGTC GCCGGCGTCG
ACGTCGCGGC CGCTGTTGGG ACGATTCGGC TTTGGACGCA AAGCGCCGGT GACGCCCACA
TCCGAACACA CGGGGGATTC ATCCGAATTA ACGAGTCTTC CGATGGAGAC TCCTGTCGTG
TCGCCCCTGC AGGATGTGGT GCCGTCGACC CGGGGAACAA CGCACGTGGC GCAATTTATT
GATTTGCCGG ATGCGGACGA TTGTGTAGAA GATTTGCGGA GACTCGCCGA GCTCGTCGTG
ATTGGGGAAA ACTTTGTGAC CACACTGCAA AAGAAAAAGG ACACTTTGCG GTCGAAAGAA
GGATGGGGAG GCGACGTCTT TGAAGACTTG TCGGAACGGG AACGGGAAAT GGAAATAGCG
GAGGAAGATG ACCGTCTGCA GCTCTTTGAT ACATTCTTCG AACGCGAGGC CCTGGAGCTT
ATCGTCACCC TCTTGATGGG CCGTGCGTTT CACTCTACCC GTCAAGATAT CCAACCAGAT
GTAGACGCGA ATGAGTCGAA CGACGACTCG ATCGAACACG ATTCTTCTCT GGCGGTACCG
CCTGATCCTT CGGACGAAGT CTGGTTGCCG TCCCTATACA TTGCGACCCA GGCGATTCAG
TCCATTTCCA TTCTGATCCA GAACGTATCC CGGGCCACGT CGCTTTACGT CATTCTCTCC
AATAACCACG TCAACACCTT GATCAACTTT CCACTCGACT TGTACGCGGA AGCGGAGCAA
GGCCGACAGC ATGATGCCAT CCGGGACGGC ACACTCACGC ACATGTTCAA AAGTCCCGAA
CTCGCGGAAC TGACCACCCA CCTCGTTACA CTGTTGAAAT CCCTAGCCAT GCGCATGAAC
GCCGAAACGC TACAGTTCTT TCTCAAATAC CCGACCGAAC ACCTCGTGGA CAGTCACGCG
GGTCCGGCGT CTTCATCGCA CTTTGAACCA ACAATCGGTA GTGTTGATTC CGTGGAGGAC
GACGACGACA ACGAGAAGCA AGGATCGGAA GGACTGCCAA CGTACCGAGT CGAATTTCCT
CTCTACGAAC GCGCCTTGGA ATTCTGCGCC GGTCACCACG ACTCCTTTGT GCGCGTGACC
GCCATGAATA TTTGCCTGAA TACCTTACAG TTGACGACCG TATCGCCCAA AGAAGACGCC
GGCGAAGAGA CCATGGATTC CGTGAAGTCT CCCGACGGTG TTCTGCACAA CTCCAAGGCG
TTGCCTTTTC GGGAGCGTTT GGCCATTGCC CAGCACGCGT GTACACCATC TCGGGTGGAG
CGGTTGGTCG CACCAATCTT TGGCAAACTG GCGGAGCGAT GGAACTCTCT CGAAGAACAC
ATTCGAGAAA TGGACACACA TAAGAATCGA ATGGGGGCTC ATGACGGGCG GAACGAGAAA
ATGGCCCAGG CGCGTGAAAA AACCCGACGC GAACGATTGC TGCGGGGCTT TCAAGAGAAA
GCTGACAGTT TACAGGATGA GTTATTGTTG TTGGAAGACG TCTTCAAGGT AAGCAAGATC
GGACCTCCCA TATACCTAGT ATTTTCCATA AGACTAACCT TGCTTTCCTT GCAGGTCGGT
CTTACAGTGT TGAATGAGCA AACCATTGAA ATGATGCTGG CCACGTTCGT TTATCCATTG
CTCCTCCAAC CGCTACTGCT TTATTATCAA CGTTTTGACG GTGCCGTTGA CCCGGGAAGG
AACGACAAGA TTGAACATCC CTTTAGTGGA TATGGAGGAG ATTTTAGTCA CGCTGAAACC
ACCCTTGCTG CAGTATCAAG TCCAGCAAAG ACCGCGCTGT TTACTCTCGC TTCTGTGTTT
CACTTTATGA CGAATCCTCC CTTGCTTCGT CTGGTTTTTG CTGCACTATT TCACCCGCTG
TCACCCGACT CCAGCACAGT CCCTACCGTC AGAAGCAATT TGGAAGTGGC GGGTCAAGGC
AGCAACCATC AATGGACGAT TCGACTAGAT ATGAAGCGTA CTTCAGACGG CCCACTATCG
GACGATCGAA CTACGTATGA CTTTGGTACG AAGCCATCTA ATAGAAGGAT AGCCAGATCC
GAGATGCCAA CTTTAGATAA AATCGAAGAA AGCGAGGAAT GCATCTTTGT TCTTTCTCCG
GCACTGGCAG AGGTGCTTGA ATTTCGAGGC GGCGATGACG CTCTCATGGA GCGGACGCGA
CCGAATCCGT ATCGCAAATC CCTGCTTGAA TGTTTGAATG TTCCTTACGA AATGGACGAA
GTACGTCAAT TAGCCGTCTG CGCATTCGAT GTAGCCTTGT CAGTATTCGA TCCCAGGTTT
ACTTCCGATA TTGTTTTTGG TACGGATGTG AACACGAATA ACAAGATCGT TCTTGAGGAT
CACACGCTAG ATGCAGAGCA AGCTCAACCT GATAATGATA AAGGAATCTG CGGGAGCGGT
ACTGATCGTT CATGCCACTC ATCGCCTATA AAAGAAAGGC TCATTGGCGT GAACCCAATT
GGTGAAGTAG TCACTGCACT TTGTGGAAGT GCTATCTTCG CCCCAAAGGA CAACTTTGGA
GGGTTCAATA TTGAATTTGA CAGCGTAGCT GCTCACGCAT TAATTAACTG CGTTCGCCGA
AACGACACAG CAATGAGGAT ATCAGCAAAG CTCGTCGAAA CGCGACGACG ACAGTCATCA
GTTTTCATTG CCCACCAGGT CACCAACCTA CAAGAAATGA CTGTGGGTGG AGCGACTTTG
TTCTTAAGTG GTTCGCCTGC AGCAGATGAT CCGAACTTTG AAGAGCAGAT GCGGGGCAGA
ATCACGAATT TACTATTCTT TGAGTCTATG GACGAGCCAG TCAAACTTCC TGCCGTTGAG
GGTTTCGTGG AGCTGCAAGG CTCTAGTACA AAGGGTGATA AGGAATTCTC TCTTTTAATA
TCTTCAGCGA GTACCTTTAA AGATATGTGT GGACGAGTTG GCAATTACCT TTTGAGCGAG
CTGGATAACG GCGACAACCA CTACGATCAA CAAGTACTCG AAGGCTGCCA AGCTAGTGCA
AGAGCTTTAT TTCACATCGA CGCTTTCTCT GCCTTTCTTA AAGCTTTAGC GACTAATGGA
GGCGCCTCTA TCTACCACGC TGCACCTCAT GGACTCGCTA TTTCTGCCTC TGGGGGTTCC
GTCGACATAT CCGATTCATG CATTTTAGAG ATGAAGCGTC AAATTTTTGC CCCCCTCTCG
GCAAACATCC TTAGTGCAAT CTTTTTCAGC GAAAACGAAA TTCCAAATCT TCCCATTCCC
GGTTCAATAA TTTCGCTTGT TGGCAGCTTG GCGATTCCAT GCGTCTGCGA GATTCCGGCA
TCGATGTCTC ATCTCTTCTT GCAAAATGGT TCGATGATTA TTTCCGAAGG CGTCACATGG
CAATCACTGT ATCTTGCCTT TCAGCATAAT TCTCTTGTGT TCGCACAACC TCAACCAGAC
GGCGAAGCAG GAAACGGGAG GGCGGTATCG TCCTGTCTTT TGGAACGCCT CTCCGTCGTT
GTTGACCAGT CACCGGATCC TTCCTCGCCA GCTCGCCGCC TCATACTATC GTACAAAAGC
TTTGACTCGG ATCCACCGCC TCTGTTTCTA TTTGACGAGC TTCCGAAGCG CGCGAAGTAC
GGCCCCTTCT CTAGAATCGA GCCTTTCACT AGTACTCTGG ATGTGTGGTT TGAAGACCAA
CGTGCCACTG AGCAGGCGTT TCAAATCTTT ATGCAGACTA TATTTGCCGC CAAGGCACAA
GGCGGCCTAG CAATTTTCCA ATTCCTTTCT TCCTAG
|
|---|
| Protein sequence | MSFRASRRMG SGVVTAPSGS AASPLTELNY LLSRWEQRIE RVRQAQQRQR EQPPPPSPAS
TSRPLLGRFG FGRKAPVTPT SEHTGDSSEL TSLPMETPVV SPLQDVVPST RGTTHVAQFI
DLPDADDCVE DLRRLAELVV IGENFVTTLQ KKKDTLRSKE GWGGDVFEDL SEREREMEIA
EEDDRLQLFD TFFEREALEL IVTLLMGRAF HSTRQDIQPD VDANESNDDS IEHDSSLAVP
PDPSDEVWLP SLYIATQAIQ SISILIQNVS RATSLYVILS NNHVNTLINF PLDLYAEAEQ
GRQHDAIRDG TLTHMFKSPE LAELTTHLVT LLKSLAMRMN AETLQFFLKY PTEHLVDSHA
GPASSSHFEP TIGSVDSVED DDDNEKQGSE GLPTYRVEFP LYERALEFCA GHHDSFVRVT
AMNICLNTLQ LTTVSPKEDA GEETMDSVKS PDGVLHNSKA LPFRERLAIA QHACTPSRVE
RLVAPIFGKL AERWNSLEEH IREMDTHKNR MGAHDGRNEK MAQAREKTRR ERLLRGFQEK
ADSLQDELLL LEDVFKVGLT VLNEQTIEMM LATFVYPLLL QPLLLYYQRF DGAVDPGRND
KIEHPFSGYG GDFSHAETTL AAVSSPAKTA LFTLASVFHF MTNPPLLRLV FAALFHPLSP
DSSTVPTVRS NLEVAGQGSN HQWTIRLDMK RTSDGPLSDD RTTYDFGTKP SNRRIARSEM
PTLDKIEESE ECIFVLSPAL AEVLEFRGGD DALMERTRPN PYRKSLLECL NVPYEMDEVR
QLAVCAFDVA LSVFDPRFTS DIVFGTDVNT NNKIVLEDHT LDAEQAQPDN DKGICGSGTD
RSCHSSPIKE RLIGVNPIGE VVTALCGSAI FAPKDNFGGF NIEFDSVAAH ALINCVRRND
TAMRISAKLV ETRRRQSSVF IAHQVTNLQE MTVGGATLFL SGSPAADDPN FEEQMRGRIT
NLLFFESMDE PVKLPAVEGF VELQGSSTKG DKEFSLLISS ASTFKDMCGR VGNYLLSELD
NGDNHYDQQV LEGCQASARA LFHIDAFSAF LKALATNGGA SIYHAAPHGL AISASGGSVD
ISDSCILEMK RQIFAPLSAN ILSAIFFSEN EIPNLPIPGS IISLVGSLAI PCVCEIPASM
SHLFLQNGSM IISEGVTWQS LYLAFQHNSL VFAQPQPDGE AGNGRAVSSC LLERLSVVVD
QSPDPSSPAR RLILSYKSFD SDPPPLFLFD ELPKRAKYGP FSRIEPFTST LDVWFEDQRA
TEQAFQIFMQ TIFAAKAQGG LAIFQFLSS
|
|---|
| |