Gene PHATRDRAFT_54677 details

Gene Information

• Locus tag: PHATRDRAFT_54677
• ID: 7202225
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011680
• Strand: +
• Start bp: 102387
• End bp: 106058
• Gene Length: 3672 bp
• Protein Length: 1087 aa
• GC content: 48%
• Product: DNA polymerase delta
• Protein accession: XP_002181135
• Protein GI: 219121567

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGACG ACGATCAGCT TTTTGACGAT GACGACAACA ACGTTGGGAT TGAAGAAGAA 
ATTCCGGCAG AGATTCTGGC GCAACAAGCA CAGGTTGTTA GTACAGTTGC GGCGAAGGAC 
CAGCAGCGTT GGAAACGAGC CCGTCTACCG GACGACCTGA GCAACCAAAC GGATCTGAAC 
CTACAGTGGC TCGACATGGA TGTTGTTTCG GGTAAACCCT TACCAGCTAA TCCCAACCGC 
ACCAAGCCTT TAGTGGGACG TCGAGAAGGA CAAGTTCCGA TCTTGCGCGG ATTTGGTGTG 
GACGAACGGG GACACTCTAT TGCTGTTTTT GTTCACGGCT TTACCCCTTG TACGTTACCG 
AATTCCGAAA GGACAGACGG CGTGTCCATC CGGCGCACAA GGCATCCAAG TACTCTCACT 
CACAATCACT TCTATTATTG CTGGCAGACG CCTACTTTGC TTTGGAAAAT GGCTACGAAC 
TGACGAATCT GGCCGAGCTG AGTGCGATAC GGCAAACTCT TACGGCGCGA CTAGCTGCTG 
CCGCCCGCGG CGGTACGGCA ACACACGCCG AAGTCCTCGG CATTGAATAC ATTACCGATC 
ACAAGTCGAT TATGGGTTAC GAAACGCCGC ACACCAAATT TTTGAAAATC TACGTGTCCT 
TGCCCGGCCT GGTGCCGACG CTGAAACGCA TCATGGAAGA CGGAATCGAT CTGCCGGGCA 
TCACGCGCAC CGGTGGAACG AGTACGGGTC TACCACCCAC ATATGCGGCC TTTGAAGCGA 
ATGTTCCGTT CGTCCTGCGT TTCATGGTGG ATCGAAAACT TTCGGGGGCT GGCTGGCTGA 
CCTTGCCGTC GGACACCTAC CAGATTCGGG AGATTCCACG GAAGGAAACC CATTGTCAGG 
TACGTACTCC GTAGCTGCGT TACTACTCGA TCGGCGTATG CGTCGTTCTC ACAGGTTCTT 
TGTTTCCTAC AGATCGAAGT CGACATTTCG TACGACGATA TTACTCCACG ACCATCGGAA 
GGCGAATGGA ACAAGATTGC CCCGTTGCGA ATTCTTTCGG TCGATATAGA ATGTCAAGGC 
CGAAAGGGCC ACTTTCCGGA AGCAGAAAAA GATCCTGTCA TCCAGATTGC CAACACGATC 
TCGCTGTACG GTCAAGATAA ACCCATTGTG CAGAACGTCT TTACACTCAA AGGCTGCTTG 
CCCATTGTTG GGGCTCAGGT TATTTGTTCC GACGAAGAGG AAGACATGCT CATGAAGTGG 
CGAGCATTTC TCGAGGCTGC TGATCCTGAC ATTATCACGG GTTACAACGT TCAAAATTTC 
GACATTCCCT ATCTCTTGGA CCGTGCGGAC TCTTTATCGA AAGGTAGCAG TCATAGAAAG 
GCGGTGCTTT CCGGTTTCGC CCAGTGGGGA CGTGTGCGCA ACACGAAGGC CAAAATGCGC 
GACACCATGT TTCAATCGTC CGCCTACGGC AAACGCGCCA ACGTGGAAAC TACCATTGAC 
GGACGAGTTA TCTTTGACAT GCTTCCTTAC ATGCAGCGTA ACCATAAGCT GAGCTCGTAC 
TCATTGAATT CGGTATGCGC AGAATATCTT GGCCAACAGA AGGAAGACGT TCATCACTCC 
ATTATTTCTG ACCTTCAAAA CGGCAGCGAC GAAGATCGCC ATCGGCTGGC TGTTTACTGT 
TTGAAGGATG CTTTGCTACC ACAACGACTC ATGGACAAGT TGAGTGTCTT GGTAAACTAT 
ATCGAGATGG CTCGAGTAAC GGGGGTTCCC ATGTCGTTTT TGATCTCACG AGGCCAGCAA 
ATCAAGGTCT TTTCGATGAT TCTACGCAAA TGCCGACACG AGAAACTTCT CGTTCCTACC 
CTGAGGAAGA GCGGCAACGC CAATGCAGAT GTTGGGTACG AAGGAGCTAC TGTCCTGGAT 
CCCATCAAGA ACTACTACGA AGTACCGATA GCCACATTGG ACTTTGCATC CCTGTATCCA 
TCAATCATGC AAGCATACAA CCTCTGTTAT TCGACTTTGG TCAATCCTGC CGATGTAGGC 
AAGCTCGACC CAGACATCTA CAGGAAAAGC GAAAACGGTA ACGTATTTGT TCATTCTAGT 
GTCAAGAAGG GTATTCTACC AACAATTCTC GAGGAATTGC TGAGCGCTCG TAAGCGAGCT 
AAAAAAGACA TGAAGAATGC TCCCACAGAT TTCGATCGAG CGGTACAAAA TGGTCGCCAG 
CTAGCGTTAA AGGTGTCTGC CAACTCTGTA TACGGTTTCA CGGGTGCTAC TGTCGGACAA 
CTCCCGTGTC TCCCAATTGC ATCATCGGTT ACATCGTATG GACGCCAACT GTTGGAAAAG 
ACCAAAACCT TTGTTGAGGA GAAATACACG AAGTCAAATG GCTATGACCA CGACGCCCAG 
GTCGTATACG GGGACACAGA TAGCGTAATG GTAAAGTTTG GTCCAGCAAC GGTCGCGGAA 
ACGTTTCCAT TGGCGATCGA AGCTGCTGAA AAAGCTTCCG AGATTTTTCC GAGTCCAATT 
CTTTGTACGC TTTATCTGTG CTACAGCTTA ACTTGGATTC AACTTTCTCT CACACATGCT 
TTGCTTTCTG GACTAACAGT GGAGTTTGAA AAGGTTTATT TTCCTTACCT CCTCATGAAC 
AAAAAACGCT ACGCTGGTCT GATGTGGACA GAAATTGAGA AGTACGACAA GTTGGACACA 
AAGGGATTGG AAGTGGTGCG TCGAGACAAC TGTCAGCTGG TCCGTGAAGT TATTCAGACG 
TCATTAAACA AGATATTGAT CGATCAAAAT GTTCAAGGGG CTATCGAGTA CGTCAAGTCT 
CAGATCTCCG ATTTACTACA AAACAAGATG GACATTTCAC GTCTGGTCAT TACAAAATCT 
CTCAATAAAG GGGCTGAATA TGCTCTTGGT CTCGGTGGGA AGAAAGACGA TTACAAAGTC 
AAGCAGGCTC ATGTAGAGCT TGCCGCGCGA ATGAAAAAAC GGGATGCCGG ATCAGCGCCA 
CAACTTGGTG ATCGTGTTCC ATACATAATT ATCACGGGTG CCAAAGGAGC TGCGAATTTC 
GAAAAGGCTG AAGATCCTAT CTACGTACTG GAAAACAATC TACCAATAGA TTGCAAGTGG 
TACTTGACAA ACCAGCTGTC GAAGCCGTTG ACTCGTATCT TCGAACCTAT CATTTCAGAT 
GTTGATAAAT CCTTACTCCA GGGAGATCAC ACTCGCAAGA TCTTTATTCC AACTCCAAGC 
GCCAGGAAAG GTAGCTTAAT GATGTTCGCC AAGAAGGTAG CACAATGTAT TGGCTGCAAG 
GCAAGCGTGG ATGGTAAGAA AGGCTACTTG TGCAAACACT GCGTAAATCG AGAAGATGCA 
ATCTATTTGG AGAAGTTAGA AATTTTGCGT GAAGCCGAAC TTCGCTACAA TGATTTGTGG 
GCAGCTGCGC AGCGTATCCA TGGTACTGTG CATTCGGACA TTATTTGTAC GGGAGACGGT 
TGCAGTTGTC AGTTTTACCG TCGAAAGAAA GTTCAAGCTG ATATACGCCT TGCTCAAGAC 
GTCCTTGACA AGTTTGCTTC TTGAGCACTT TGATCGATAG CGCTAGTAAC TAAAGCCGAC 
ACCATGACGA ATTGGCACTC GGTATCCAAG ATCGTATTTA AGAAATCATA ACAGTATTTT 
TTACGCGCCA TG 

 

Protein sequence

MIDDDQLFDD DDNNVGIEEE IPAEILAQQA QVVSTVAAKD QQRWKRARLP DDLSNQTDLN 
LQWLDMDVVS EGQVPILRGF GVDERGHSIA VFVHGFTPYA YFALENGYEL TNLAELSAIR 
QTLTARLAAA ARGGTATHAE VLGIEYITDH KSIMGYETPH TKFLKIYVSL PGLVPTLKRI 
MEDGIDLPGI TRTGGTSTGL PPTYAAFEAN VPFVLRFMVD RKLSGAGWLT LPSDTYQIRE 
IPRKETHCQI EVDISYDDIT PRPSEGEWNK IAPLRILSVD IECQGRKGHF PEAEKDPVIQ 
IANTISLYGQ DKPIVQNVFT LKGCLPIVGA QVICSDEEED MLMKWRAFLE AADPDIITGY 
NVQNFDIPYL LDRADSLSKG SSHRKAVLSG FAQWGRVRNT KAKMRDTMFQ SSAYGKRANV 
ETTIDGRVIF DMLPYMQRNH KLSSYSLNSV CAEYLGQQKE DVHHSIISDL QNGSDEDRHR 
LAVYCLKDAL LPQRLMDKLS VLVNYIEMAR VTGVPMSFLI SRGQQIKVFS MILRKCRHEK 
LLVPTLRKSG NANADVGYEG ATVLDPIKNY YEVPIATLDF ASLYPSIMQA YNLCYSTLVN 
PADVGKLDPD IYRKSENGNV FVHSSVKKGI LPTILEELLS ARKRAKKDMK NAPTDFDRAV 
QNGRQLALKV SANSVYGFTG ATVGQLPCLP IASSVTSYGR QLLEKTKTFV EEKYTKSNGY 
DHDAQVVYGD TDSVMVKFGP ATVAETFPLA IEAAEKASEI FPSPILLEFE KVYFPYLLMN 
KKRYAGLMWT EIEKYDKLDT KGLEVVRRDN CQLVREVIQT SLNKILIDQN VQGAIEYVKS 
QISDLLQNKM DISRLVITKS LNKGAEYALG LGGKKDDYKV KQAHVELAAR MKKRDAGSAP 
QLGDRVPYII ITGAKGAANF EKAEDPIYVL ENNLPIDCKW YLTNQLSKPL TRIFEPIISD 
VDKSLLQGDH TRKIFIPTPS ARKGSLMMFA KKVAQCIGCK ASVDGKKGYL CKHCVNREDA 
IYLEKLEILR EAELRYNDLW AAAQRIHGTV HSDIICTGDG CSCQFYRRKK VQADIRLAQD 
VLDKFAS