Gene PHATRDRAFT_21228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_21228 
Symbol 
ID7202078 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011680 
Strand
Start bp43605 
End bp44414 
Gene Length810 bp 
Protein Length225 aa 
Translation table 
GC content47% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002181123 
Protein GI219121541 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TATAAAAACA GATATCCTTA TCCATTACGT GTATATTCAC AGCTAGCCGC ACATCAACTC 
ATGTCAGAAA AGAAGAAGAA TTTACGCAAG TTGAGCCATA GATTGTCTTA CGTCTTGAGA
CACGGTGCCC TAGATATGGG TCTCGAGATG ACTGCTGACG GGTACGTCCC AGTTGACAGT
TTGTTGATTT TGCAGCATCC CAAGTTCATT GGTAATCAAT GGACGCTTCA GGATATACGG
GATGTAGTCA GCGATAGTGA CAAGCAACGA TTCAAGCTGC GCGAAAAGCC TGCTTCGGAT
TATGGACAAG CAACTCAACG TACCGTTGAA AGACTAACAC AGACTACGAC TGCCACCAGC
AATATGCTTC TCTGTATTCG GGCCAATCAA GGTCACACAA TTTCATTCAT AAAGCCAGAG
TTGCTGCTAG TCCGTCTGTC CGCTGAAGAA TTACGTCGAA TTCCCACCAT TGTACACGGA
ACATACTCTG CTTTGTGGCC GGCTATACAA ATTTCTGGGG GGTTGTCGCG GATGAAGCGG
ACGCATATAC ATTGTGCATC CGGTCTGATT GGAGAGAACG GAGTAATATC TGGGATGCGA
CGAGGCTGCG ATGTCTATAT ATACATAAAT GCGGAGGCAT GCGCTGACGC CGGCGTTGTT
TTCTACCGCA GTGACAACGG AGTGCTGCTT ACAGCTGGAA TAAAAGGAGG AATTCTACCT
TGTAAGTATT TCTCGCACGT GACAGACGCT GGCGGAAACG AGATTCTCGT TCGGTCCAAG
ACGGAGGGAA GTAGGTCATG CCTAGGCTGA
 
Protein sequence
MSEKKKNLRK LSHRLSYVLR HGALDMGLEM TADGYVPVDS LLILQHPKFI GNQWTLQDIR 
DVVSDSDKQR FKLREKPASD YGQATQRHTI SFIKPELLLV RLSAEELRRI PTIVHGTYSA
LWPAIQISGG LSRMKRTHIH CASGLIGENG VISGMRRGCD VYIYINAEAC ADAGVVFYRS
DNGVLLTAGI KGGILPCKYF SHVTDAGGNE ILVRSKTEGS RSCLG