| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_46925 |
|---|
| Symbol | |
|---|
| ID | 7204456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011679 |
|---|
| Strand | - |
|---|
| Start bp | 822693 |
|---|
| End bp | 823899 |
|---|
| Gene Length | 1207 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185961 |
|---|
| Protein GI | 219121476 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000331209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTCAG AGAGGAAAGA GGTACGCCCG CCAAATCCGA TCAAGAATCG AATATTCCAA
GTGGTTTTGT TGCTTGCCGC GTTGGGCGTT GTAGCCGTAA GCATTGAGAA TGCAAGGGTC
GCCTTCTTGT CTGAGAATGT TGGCAAACAA CTTGCCGTAA CTCCAAGGGT AAAGAAGCGG
CTACCAGACA TGTCTGAAAC TGGAGGAGTG GTCATATTTT TTCATGTCGC CAAGACGGGA
GGAACCACAA TCAGGAGTAA TGTTGCCCAA ATGCCGGGTG TACGACGTCT TTGGGTCCTC
GATACACCGG CACTCTTCAA AAACTATACT GTTGAGGCTA CAAGTTATCT CAAAGGCCAG
CCAACAGATC CAACGAAACC TATCCTATTT CTCGAATTCC ACGGATTCCG TAGTATTGGT
ATGAAACCAT TGCACAATGC TATTGAAAAA TGGCGGGCTG TTGCGACACA GTACAATACT
TCGCTCTTCA CATTTACTGT CCTGCGTGAG CCAGTTTCGT TCGCCGTTTC AAATTTCAAT
TTCTTTTACG CCGAACCCTG TTCCTTTGGC GAGAAAGGCT GCTTTTGGCC GCTTTGGCCT
GCGACGGAAA AATCGCTGGT GGCCACCGCG AGTCCTAATC TCCAATGCCT GCTACTCGTC
AAGGACCATA ATACAATTTT CAAAAACGCT ACACGTCCCG ATGTTAAAAA ACGAGAATGC
GTTGACATCT ACGAAATGAT GCGGCAAGAT ATGGACTGGA TTGGTCGGAC CGAAACCTTG
TCGACCGAGA CGGAACCCCT GTTGGCGCAC GTACTTCTGG GCAACGCCAG CAAGGCAGCC
GAAATGCGCG TGTACAACCA TAACTCACTG CCGGCTCAGT TAAAGGCATC TAAATTGAGT
ACTGCGGCAA TACAGTACAT CAGAAATATT TCGCAATTCG ACCAAGCTAT GTACGAACGT
ACGCAGATGG ACTACCCAAT CGAAATGTGG GAAGAACTTG AACCGCAGAA TGAACTTTTA
TCTCCCTTGG AAAAAGCAGC TTGACCAAAA GAAAATTTTT GCCGATTCTT GTGACCGCGC
AAGAACAGGC AAGGTCGGAC GCTTGTTAAA ATAGCTTCAT ACAAGATCGA ATTCTCGGAT
AACAAAACAC ACTGTACCTT GACGAAAGGT TCTTGTAAAA ACAATAGGAG GTTTGTTGTT
ATCCTTG
|
|---|
| Protein sequence | MLSERKEVRP PNPIKNRIFQ VVLLLAALGV VAVSIENARV AFLSENVGKQ LAVTPRVKKR
LPDMSETGGV VIFFHVAKTG GTTIRSNVAQ MPGVRRLWVL DTPALFKNYT VEATSYLKGQ
PTDPTKPILF LEFHGFRSIG MKPLHNAIEK WRAVATQYNT SLFTFTVLRE PVSFAVSNFN
FFYAEPCSFG EKGCFWPLWP ATEKSLVATA SPNLQCLLLV KDHNTIFKNA TRPDVKKREC
VDIYEMMRQD MDWIGRTETL STETEPLLAH VLLGNASKAA EMRVYNHNSL PAQLKASKLS
TAAIQYIRNI SQFDQAMYER TQMDYPIEMW EELEPQNELL SPLEKAA
|
|---|
| |