Gene PHATR_28237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATR_28237 
SymbolSMC6 
ID7204555 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011679 
Strand+ 
Start bp530042 
End bp530822 
Gene Length781 bp 
Protein Length220 aa 
Translation table 
GC content53% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002185720 
Protein GI219120977 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.359759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATCCTCCAGT CTCAACGGAT CGACTCGTCT TGATTCGATC ATGACGCCCT CCATAAAGAA 
ACGCTCGTCC GAGGCGTCGG AACTCGACGC CGAAGCAGCA GTCCCCAAAC GTCAAGCCAC 
GGAGAAGGAG AACCAGGCCG ATCCCAACGC CGGAGTAGAG GACGACGTCG CAGAAACCTT 
GGCTTCCCCC AAAAAGGCAA TCAATGTTGT GGGTCAGCCT CCGGAAGCCG GAATCATCAA 
AGAAGTTTAC GTGGAGAATT TCATGTGTCA CCCAAAACTG CGGGTTACGC TTTGTCGGAA 
CGTGAATTTT ATTCACGGCC AGAATGGGTC GGGCAAGTCC GCCATTCTGG CCGCCATACA 
AATATGTCTG GGGGCGTCCG CGTCGCGCAC CCACCGCGCC AGGAATCTCA AGGGACTGGT 
GCGGAAGGAC GCTGGCCCTA ACGCGACTGC CAAAGTGCGG GTGACGCTCT GGAATCAAGG 
CAACGACGGT TACCTGCCAG AAACCTACGG TGATTCGATT ACTGTCGAGC GAACGATCTC 
GCTACGGGGC GGATACAACG GCTACAAACT ACTGGATCAC AACGGCAAGG AACGCTCGCG 
CAACAAGAAA GATTTGCACG AAATGTTGGA CATGCTGTAA GTGTTCTAAC GAAGCGACGG 
ATGTGTCTGT ACTAATGGAT TCATAGGCTG ACACACCCGT TTTGAAATTT ATCAGAAACA 
TTCAAGTCGA AAACCCCGTT GCCGTCTTGG ACCAGGACGA AGCCAAAAAA TTTCTTACCG 
G
 
Protein sequence
MTPSIKKRSS EASELDAEAA VPKRQATEKE NQADPNAGVE DDVAETLASP KKAINVVGQP 
PEAGIIKEVY VENFMCHPKL RVTLCRNVNF IHGQNGSGKS AILAAIQICL GASASRTHRA 
RNLKGLVRKD AGPNATAKVR VTLWNQGNDG YLPETYGDSI TVERTISLRG GYNGYKLLDH 
NGKERSRNKK DLHEMLDMLN IQVENPVAVL DQDEAKKFLT