Gene PHATR_28215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATR_28215 
Symbol 
ID7204658 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011679 
Strand
Start bp450078 
End bp451671 
Gene Length1594 bp 
Protein Length297 aa 
Translation table 
GC content48% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002185706 
Protein GI219120949 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
AGCACACAGC ATATCTCCTC CTCTTGATAG AAGCAGGACG CTGTTGTATC TCCTTGTTGC 
AAACAACTAT TCCGCACATT TAGACATCTA CCCGCACCTT GAAAACAGTC TTATCAGATT
TCGCTGCACT TTGTTGATAT CCGGAGACTT TTTCCGCGAG AAAATTTCGA TTCATGTGTT
GCTGCTGTCC GCCGGCTATA TCTGCGCTAT TTTGCCTTTG GGCAAAGTCA GGATGCTCGA
AAGGAACTGT GGCGGGGGCC TTGACTTTTT TTCCGCCTGA ACCTCCATTA TATCGATTCG
AAAGACATGA CGCAGAAGGC CGAGTCTTGC GTGACAATCA AGAAGCTGAC GATATTCGGG
CCGTTAACCA AAGTGTCGAC GAGGAAGTTG GAGACTTGCA ACTGCCAGAG TCATCCGAAC
CCCTTGACGC CAAGACTGAT GGACAAACAA AGGAGAAGAT GAAGTCACCA ATCGAGCAAC
TGACACAGCA GGCCGGCGAA CGAAAGATAC GTGCAAGAGA ACGACAGAAA CGGGATGCCA
AAGATGCGGT ACACAACGTG TCGTTCAAAC TCTTGCTAGA TCCGCGGCTA CAAGTCCCGC
CGCACGACGA CAGCTTAATT GAAGCTGTCA AGATTCCTTC GGCTAGGGGA GTTTACCTTG
CGGCAGTGCT TTACCGAATG TCACCTCCGT CTCGCCCGGC TGACAGGAAA ACAATCATCT
ACAGCCATGG GAATGCCACG GATATCGGTG CAATGTTCCC CATCCAAGTA GTTATGGCGC
ACAGCCTAGA CTGCAATGTA CTCTCATATG ACTACTCGGG GTACGGAGAA AGTGGAGGTG
TACCTGATGA ACACGCCACC TACCGGGACA TGGAAGCCGT TTATGAGTAC GTATTGGAAC
ACCTGGCAGG GAATGCCCCA TCCAATGTGA TATTGTATGG TCAGTCTGTC GGGAGTGGAC
CGTGCTGCTA CTTAGCAGCC ACAGAAAATG ATTTGGGAGG CATGATTTTG CACAGTCCGT
TTACAAGTGG AATGCGAGTA TTGACGCCGA GCCGGTATGT GAATACAGTG CTTTCCAAGT
GTTTTTCTCC CAGGAATACA ATTTTTCATT CTGTGAGCAT CGTTTTTGTT TGTAGGTTAT
TGTCTTGTCT GGACATATAT CCAAATATTG ATCGCATCAA AAAGGTTTCG TGTCCTGTGA
TGGTGATCCA TGGCCGCCTT GATCAAGAAG TAGACGTTTC ACATGGCATG GACATTCACA
ATGCCGTACC TGAAGAATGT CGTCGAGATC CATGGTGGGT TTCAGATCGG GGACATAATG
ACATCATCGA GGGACCGGGA AAACTGTCCC AGTATGTTCG TCGATTGAGA AGATTCCTGA
ACTCCCTGGA CACTTGAAGA GTGTAAATGA CGACGTGTAT ATGATCTCGT CAGTCATTTT
GTTCTCTTTT TTGCCTAAGG CTGCGAATAT AGCTTTGAAG CCTACGTTTT GTATTGTGAA
CAGGGACTAT TTACTCTTCC ACGGAACAGA TATCTCCTTT GCCTTCTATC TTCGTGTCTT
GTAAATTCTT TTACTCGCTT CGCGGTCTTT CCAA
 
Protein sequence
MCCCCPPAIS ALFCLWAKSG CSKGTVAGAL TFFPPEPPLY RFERHDAEGR VLHPRLQVPP 
HDDSLIEAVK IPSARGVYLA AVLYRMSPPS RPADRKTIIY SHGNATDIGA MFPIQVVMAH
SLDCNVLSYD YSGYGESGGV PDEHATYRDM EAVYEYVLEH LAGNAPSNVI LYGQSVGSGP
CCYLAATEND LGGMILHSPF TSGMRVLTPS RLLSCLDIYP NIDRIKKVSC PVMVIHGRLD
QEVDVSHGMD IHNAVPEECR RDPWWVSDRG HNDIIEGPGK LSQYVRRLRR FLNSLDT