Gene PHATR_28191 details

Gene Information

• Locus tag: PHATR_28191
• Symbol: SSD1
• ID: 7204525
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011679
• Strand: +
• Start bp: 376131
• End bp: 378439
• Gene Length: 2309 bp
• Protein Length: 533 aa
• GC content: 48%
• Product: succinate semialdehyde dehydrogenase
• Protein accession: XP_002185692
• Protein GI: 219120921

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.574247
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TAGCGTTTCT TCGCAGCGCG CAGCGCTTGG GGGCATGTTG TAGAAGGAGA CAATGGTGGC 
AAAAATACTA AGGAGGATGA TGTTCTTTGA AATTCTTCGC TTCAGGCGTA CTTTTTTGGT 
CCGAGCCTTT TCCATGTCCT CACTATCGCC ACTCGCATCT CTTTTAAAAA ATCCATCACT 
ACTTGTCAAA CTTGACGACG GTCATCTTCA ATCTTCTGAA AGCACTTTTG CAGTATACAA 
TCCAGCCGAC CCCAACGTTA TCGTTGGAAA CGTCCCCATC ATGGCTCGAG AAGACTGCTC 
TCGTGCCATT CAAGACTCGC ACGTTGCACT GACAACTCAT TGGCGAGATG GAACAACGGC 
GGCTCATCGA GCCGAGCTAT TACGCGCCTG GGCCGCTCTT ATTCACGACA ACGCCGACGA 
TATGGCCACG ATCATGACCA TGGAATCGGG CAAACCTTGG AAGGAAAGTC GCGGTGAAAC 
GGACTACGCC ATATCTTTCT TGGAGTATTA CGCCTCTGAA GCAATCAGAC CATCTGGAGC 
CGGTGGGGGA TTCTTGACGC CAACGCCCTT TTTCGACCCC GGTTCGGGCG CACCACGGGG 
TCAAGTACTT GCCATGCACC AGGCTGTAGG CGTAACGGCA CTCATAACAC CATGGAATTT 
TCCCATTGCA ATGGTACGTA CATCACTGTA TTCCTTTGAT GATCCGAACG TACTATTTGT 
GAGCAACATC GACTGTAATC TAACTAGTTT TTGTGCTGTC ATGAGGAAGA TCACACGGAA 
AGTCGGACCT GCTCTGGCTG CCGGCTGCAC AGCGATAGTC AAACCGAGCG AATTAACTCC 
AATAACAGCA CTGGCATTGC AGGTATTAGC AGATGAAGCA GGCATCCCGC AGGGCGTCTT 
GCAAACCATA ACGCCAGACA CGGAGAATAC CGCCAGTGTC GGTGAAGAGT TCTGTCGCAA 
TCCACTAGTT CAAAAACTCA GCTTTACTGG ATCCACGGCT ATCGGAAAGA TGCTTATGGC 
ACAGAGCAGC AACACAGTCA AACGATTATC TTTGGAATTG GGTGGGAACG CTCCATTTGT 
GGTATTCGCT GACGCTGATC TAGACCAAGC CGTGACGGCA GCAGTGGCAT CCAAATATCG 
TCATGCGGGC CAAACTTGTG TGTGTGCTGA TCGTTTTCTG GTTCATGCGT CAGTGCACGA 
TATTTTTGTT GGCAAATTGA AAAGGTGTGT CCAAGAGTTA ACAGTAGGGC CAGGTATGGA 
AGAGGGGACG ACGCTGGGGC CACTGATTTC CAGAGATGCA GTTGCGTCTG TGGACGAGAA 
GGTTCAAGAA GCAATAAATG AAGGAGCAGA ACTCGTCCTC GGTGGATCAC CTCTGAAAAG 
AAAAGGTCCC AGTTATTATG ATCCAACCAT ATTGACCAAC GTATCATCAG ATTCACGTAT 
TTGGAAAACC GAAACTTTTG GGCCTGTGGC TCCGATACGC CCATTTGAGT CCGATGAAGA 
AGCTCTGGCG ATTGCAAACG ACTCTAATGC GGGGTTGGCT GCCTATTTTT GCTCGCGAGA 
CCTGTCTCGT GCGTTTCAAT TTTCAAAACG GTAAGAGAAA ATCTTCATTG ACATCTCGTT 
TGACCAATCT TTTTTTCATC CTAAATCTTG CACTGATGAC AGGCTAGAAT GTGGAATCGT 
CGGTATCAAT GAAGGAATCA TCAGCCACTG TGTAGCGCCT TTTGGAGGAA TTAAAGCAAG 
CGGCTTTGGT CGGGAGGGAA GCCCATTGGG CATTGCCGAA TATCTCGAGA CGAAATACGT 
GTTCTTGAAT TTCAATGCCT AACATTTGGA AGCTTTCTTG ATGAATAAGA GGCAATTGAT 
TTACCTGTTT ACGATGCAAT AAGTTCATAT CAGCTTTTCG TCGTTTTTAC CATCTTTCTC 
GCGGAATTCC AGTGAGTTGT GAAAGATTGA GGCTTGTTCC TGACTCTGAA TATTAGCCGG 
TAAGGATACT GTATGCTCTA GCTGGTGCCG AGTTCTGGGA ACATCGGCCA AACGAAATGA 
CGCTCGCTTG GCTGTGTCGT CGCCACTCAA GCAGAAAGAT GCTGCTAGCG TAGCCTGCGC 
TTCATCGCTC AAGGGAATAG GTTCCATATC GCAATGTCCA TCGACAGGAT AAAAGTCCAC 
ATCGGAAGGA AGCCTTGCAA AGGATTCCCT TATGAAGGAA GCTAGTGAGC TCCGTCTCTC 
CTCCGCGGTT ACTTCAATGT CGCTCTGGTG TACATTGAGA CTCTTCCCTT TGACCTTTCC 
ACGATTTCTT GCAGCCCTCT TGATCTCAT 

 

Protein sequence

MVAKILRRMM FFEILRFRRT FLVRAFSMSS LSPLASLLKN PSLLVKLDDG HLQSSESTFA 
VYNPADPNVI VGNVPIMARE DCSRAIQDSH VALTTHWRDG TTAAHRAELL RAWAALIHDN 
ADDMATIMTM ESGKPWKESR GETDYAISFL EYYASEAIRP SGAGGGFLTP TPFFDPGSGA 
PRGQVLAMHQ AVGVTALITP WNFPIAMITR KVGPALAAGC TAIVKPSELT PITALALQVL 
ADEAGIPQGV LQTITPDTEN TASVGEEFCR NPLVQKLSFT GSTAIGKMLM AQSSNTVKRL 
SLELGGNAPF VVFADADLDQ AVTAAVASKY RHAGQTCVCA DRFLVHASVH DIFVGKLKRC 
VQELTVGPGM EEGTTLGPLI SRDAVASVDE KVQEAINEGA ELVLGGSPLK RKGPSYYDPT 
ILTNVSSDSR IWKTETFGPV APIRPFESDE EALAIANDSN AGLAAYFCSR DLSRAFQFSK 
RLECGIVGIN EGIISHCVAP FGGIKASGFG REGSPLGIAE YLETKYVFLN FNA