| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_21201 |
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| Symbol | SQD1 |
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| ID | 7204758 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011679 |
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| Strand | - |
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| Start bp | 857133 |
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| End bp | 858918 |
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| Gene Length | 1786 bp |
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| Protein Length | 456 aa |
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| Translation table | |
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| GC content | 49% |
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| IMG OID | |
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| Product | UDP-sulfoquinovose synthase, plastid precursor |
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| Protein accession | XP_002185968 |
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| Protein GI | 219121490 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | AAACATCATA CCATCACGCT TGTCGTTGTG GTGGGGATCC TCGCTCGTCC TTGAGTCAAC
CTGTGGTAGA TCGCATCTTT TTTGTTTCGC AAAATAGTTG TCAATCGTTG GCAAAGACAT
TATTTCGTCT ACTTTCACAC CATGAAGCTT TTGATTTTTC TTTCTTTAGT GACCTCTGCT
CATTCGTTTG TTCCAGTTCT GCATCTCTCG GCGCAGTCTA CACCTTCGCG GACGAAACTA
TTTGCCGAAG GTGCGAACGG AGATTCCTCA GCGGCGAGCA AAAAGAAGGT CATCGTCTTG
GGAGGAGACG GGTTCTGCGG TTGGCCAACT TCTCTGTACC TGTCGGATCA GGGGCATGAA
GTTGTGATCG TCGACAATCT CAGCCGACGC AACATTGACA TCGAGCTCGG ATGCGACTCG
CTGACTCCTA TCCGATCCCC CGAAGTGAGT AGTCTTGATG GCACAGCTAA AGACAGCTCG
AAGGAAGTAC CCCACTTCGA ATGAAAGGTT AAATTTCATA TGAATTTACA CCCATTCAAT
TGCCAAAGCA AACGCATGAT GATGATTTGC TTACCAAATT GCTTTCCTTT ACGAATTGCA
GGTACGTTGC CAAGCCTGGA AGGAAGTTAG TGGCAAGGAA ATCCGCTTCG TCAACTTGGA
CGTCGCCAAG GAATATGATC TTTTGGTGGA TCTCATCAAG CAAGAAAAGC CCGATTCCAT
CGTGCACTTT GCGGAGCAGC GTGCTGCTCC GTACAGTATG AAATCCGCCA AGACGAAGCG
ATACACTGTC GACAACAACG TTGGTGGCTC CAACAACCTT TGTTGCGCTG TTATCGACTC
AGAGGTCGAC GCCCATATCA TCCATTTGGG AACCATGGGC GTGTACGGGT ACGGAACTAG
CGGTGGAGAA ATTCCGGAAG GATACATCGA TGTCACTCTA CCCGGCGGCC GTGATGCCAA
CATTCTGCAC CCTGCCCACC CTGGAAGCGT CTACCATGCC ACCAAGTGCT TGGATGCCCT
TTTGTGGCAA TTTTACCAAA AAAACGACCA GCTACGTATT ACTGATTTGC ATCAGGGCAT
TGTCTGGGGT ACCAACACAC CACAGACAGC CCTGGACGAA CGTTTGATCA ATCGGTTTGA
CTATGATGGG GACTACGGTA CAGTTTTGAA CCGTTTCTTG ATGCAAGCCG CCATGGGCGT
TCCGTTGACC GTCTACGGAA CTGGCGGGCA AACTCGAGCC TTTATTCATA TTTCCGACAC
GGCTCGTTGC ATCGATTTAG CTATAAGCAA CCCGCCCACC GCTGGCGACC GCGTCGAAAT
CTTCAATCAG GTCGCCGAAA CCCGTCGTGT GCGGGATATT GCTGAGTTGG TCGCCAGTAT
GACCGATGTC GAAGTGAACT TTATCCCCAA TCCTCGTCAA GAAGCTGCGG AGAATGATTT
GGATGTGGCC AATCGTAAGT TTTGCAATCT TGGTTTGGAT CCCATTACTC TCGATACGGG
CCTCTTTGAT GAAGTCACCG AAATTGTCAA GAAGTACAAG TCACGCTGTG ATCCCACAAA
GATTCTGCCG GCGAGTTTCT GGAACAAAAA ACGCGCAGAA GAGTGCGCCA GCATCGATCC
CAAGAGCATT CAATTGAAGA AAGACGAAGC GGAAGTCGCC AAGGCGTAAG TCGACCACGA
ACTGGTGATG CCCCATTGGT TTATAGGTAT AATGCGCGAG AAGTTCGTTT AACGCTTGGC
CTCGGATCTG CTTGCTCCTA TCATAGTACA CATTATTGCT AGGTTC
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| Protein sequence | MKLLIFLSLV TSAHSFVPVL HLSAQSTPSR TKLFAEGANG DSSAASKKKV IVLGGDGFCG
WPTSLYLSDQ GHEVVIVDNL SRRNIDIELG CDSLTPIRSP EVRCQAWKEV SGKEIRFVNL
DVAKEYDLLV DLIKQEKPDS IVHFAEQRAA PYSMKSAKTK RYTVDNNVGG SNNLCCAVID
SEVDAHIIHL GTMGVYGYGT SGGEIPEGYI DVTLPGGRDA NILHPAHPGS VYHATKCLDA
LLWQFYQKND QLRITDLHQG IVWGTNTPQT ALDERLINRF DYDGDYGTVL NRFLMQAAMG
VPLTVYGTGG QTRAFIHISD TARCIDLAIS NPPTAGDRVE IFNQVAETRR VRDIAELVAS
MTDVEVNFIP NPRQEAAEND LDVANRKFCN LGLDPITLDT GLFDEVTEIV KKYKSRCDPT
KILPASFWNK KRAEECASID PKSIQLKKDE AEVAKA
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