| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_13232 |
|---|
| Symbol | |
|---|
| ID | 7204685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011679 |
|---|
| Strand | + |
|---|
| Start bp | 577877 |
|---|
| End bp | 579394 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185733 |
|---|
| Protein GI | 219121003 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.827246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAATT TTGCGGATGC GAAAATTGCG TATGCGACAC AGTCCAACAT GGAGCTGGGT
AGGGCGCTTT TGTCCTTCAG TCTGTGCCAA ATCAAGACAC TGGTTAAGTA CGCCAATCCG
CTCCTCACTC TATCAAGGTT CTTGCTGGGT GATCGTTTTA CGGACGCTGC TCTCAAGGCT
ACCCTGTACG GACATTTCGT AGCTGGTGAA GATGAAGTGC GTATCCAACC GAAAGTGCGC
GTTCTGGAAT ACGCAGGCAT CGGTAGTATT TTGGACTACG CTGCTGAAGA AGAAGGTCAA
GGGGTGGTGA CCCCGGCAAC ATCTGTCGAT CCTGCTTCAC AACCAATCGC ACGTGTCTAC
GATTACACGT GCGAAGCCAA GTGCGATCGT CACTTGGAAA CGTTCAAGAG TTGCATACAA
GCAGTTGCCA ATCTCGAAAA AGATGGGTAC GCTGCCGTCA AAATTACGGC TTTGACGAAT
CCAGATCTAC TCGAACGAAT GTCGAAAGCT ATCGTGGAAG CCCGTAACTT GTTTGCCAAG
TTCGATTCCA ACGGCGACGG CATGATCAGT CGACACGAGT TCGCTCAAAC TTTCCGAGTC
TTTTTCAAGG GCGAAGATAC CAAGCTGTCC AACATGTTGG AAGAATTACA ACCTGACCAG
AACGGAAATG TCGACTATAT TATGTGGTCC ATGATGCTTG CTCCTGGCGA TCTGCCACGA
ATCTGTGCGG GCTGCCGTGA GGTAGGCCCT CTGGCACTTG CCGCACCCAC AGACGAAGAG
GTTGAGCTCA TCGAATCAAT GTTCCGACGA GGCCACGCTC TAGCGCAGGA AGCGGCTCAG
TGCGGCTCCT CCGTTCTCAT CGACGCTGAA CAATATCGCT ACCAACCGGC TATTGATAAC
CTTGTTTTGG ATTTGCAACG CACGTTTAAC GCGACAAGTG AATCCAAGTT TCCTATCGTA
TACAATACTT ACCAATGCTA TTTGAAAGAT TCCATGGAGC GTCTCAAAAC AGATTTGGAA
CGTTCGGAAC GTTTTGATTA CCACTTTGGT GCTAAACTCG TTCGTGGTGC TTATTTGGAG
AGTGAACGAG AACTGGCAGA AAAGGCCAAA GTTCCCAGTC CAGTCTACAC AGAACTCGAA
GAGACGCATC AGTGCTACAA TGAAGCTGTC GAATTTTTGT TGGAATACTC GACACAGTCT
AATAAGAAGG TCGAACTCAT GCTGGCGACG CACAACCAAG AGTCGATAGA GAAGGCAATC
GAGGTCATGA ATCGGCTCGG CGTTCACCGT CAAGACTCAA CCGTGAGCTT TGGACAGCTG
CTGGGAATGG CGGACCATCT CTCCTTCAAT CTGGGTCGCC ACGGCTACCG CGCGTACAAG
TATGTACCGT ACGGTGAAGT TAAGGAAGCC ATGCCATATT TGATCCGTCG AGCCAACGAA
AACAGCTCTC TGGCTGGCGG AGCCTCTCGA GAAATGGCAA TGATTGGCCA AGAGCTTAAG
CGACGTGCTT TCTGTTGA
|
|---|
| Protein sequence | MPNFADAKIA YATQSNMELG RALLSFSLCQ IKTLVKYANP LLTLSRFLLG DRFTDAALKA
TLYGHFVAGE DEVRIQPKVR VLEYAGIGSI LDYAAEEEGQ GVVTPATSVD PASQPIARVY
DYTCEAKCDR HLETFKSCIQ AVANLEKDGY AAVKITALTN PDLLERMSKA IVEARNLFAK
FDSNGDGMIS RHEFAQTFRV FFKGEDTKLS NMLEELQPDQ NGNVDYIMWS MMLAPGDLPR
ICAGCREVGP LALAAPTDEE VELIESMFRR GHALAQEAAQ CGSSVLIDAE QYRYQPAIDN
LVLDLQRTFN ATSESKFPIV YNTYQCYLKD SMERLKTDLE RSERFDYHFG AKLVRGAYLE
SERELAEKAK VPSPVYTELE ETHQCYNEAV EFLLEYSTQS NKKVELMLAT HNQESIEKAI
EVMNRLGVHR QDSTVSFGQL LGMADHLSFN LGRHGYRAYK YVPYGEVKEA MPYLIRRANE
NSSLAGGASR EMAMIGQELK RRAFC
|
|---|
| |