Gene PHATRDRAFT_27240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_27240 
Symbol 
ID7200418 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011675 
Strand
Start bp871029 
End bp874455 
Gene Length3427 bp 
Protein Length746 aa 
Translation table 
GC content49% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002179736 
Protein GI219117900 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CCCTCGATCT TTTCTGTTCC TCGGAAGTCA GCTCAACTTT CTGCCTGGGC AGCCAGTTTT 
TTGCGGCACT CGATTTCAGA CTTTCATCGT GAGGGTGAAA ATACCAAGAA TTGCCATTTC
TTGTGTCACC ATCGTCTTTC CAATCCCTTG CTTCGGAATG TCATGCGCAG AAGCCAGTGT
ATTGTCAGTA GCAACAAGAA AACTACTGGT ATAAAGACAC TGCTGCCGCG CTTCCAAGCC
TTCTTGTGGT GTCTCGTCTT TTCATCTCGA TTTCTTTCGG CTGAAGGACT CGCCATCTTC
ATGGGTCTCC TTAAAGTCGG CGTTCCCAAA TCCTGGGACG ATTCGAAGAA AGATCTCGAT
TACATTCGCA AGGCTGGTGT TCGGCAATTC GTTTCTACCT ATAATCGTGT GAAGGACTTT
AAAGGCGATG AACTCTTGTG GGGAGATGAA ATAGAGTACG GTATCTTTCA CATGGATCAC
AATGCTAAGA AAGTGCGCTT GTCGTTGCGA GCCAAAGAAG TAAGTATTGA CGAATGTGGA
CCGGAATTTT TCAGTGTGGC AGATCAACGA GCAAAGCTCT AATTCTTCCT TTGGCCTGCT
GCACAGATCA TGGACGAACT GAATCGCAAA GAGACCCTTC ATTCCCAAAT CGTGGAAGGC
TGCAACTGGG TACCAGAATA CGGAGCGTGG ATGGTGGAGG CCACACCCGA CCGTCCTTAC
ACGGGTTACA CGACCGATCT ACTACGAGTC GAACGTAACA TGCGGCTCCG CCGCAAGCGT
ATGCTCACGG TATTGTCGGA AGAGGAAGTG GCTCCAACGA TCAGCTCATT TTTCATGCTC
GGCGCGCAAG GGGATGACGG GACGATCCCC TCTACAACCG TCGGCGGACC TGTCACCGAA
AGTGAGTATA TCAGTGACGG GATAATTAAT CCTCACCCGC GTTTCGGAAC GCTGACGGCC
AATATTCGCC AACGCCGCGG TTCCAAAGTC AACATACGAG TGCCGCTATT TCGGGATACC
CGCACACCAG AATACATTGA TTTTGAGCCA CCCAAGGGCA GCGTCGATGG CTGCTGTGGT
AGTGACAGCC AGCAGCTGTG GCGGTACGGC AAAGGAGATG TGTCTATGGA AAAGCACGGA
ATGAACTACG TTATTGTGGG TTGCTCTAAA TCCTCCACGG ACGAAGAGTT TGATGATCAC
GCGATAGATC AAGGTGCTAC CTTGCAAAAA TGGTTGGTTG ACGTAAATTG TGCGGGCTGC
AAAGGTTTGT TTTATCGTCG TGCACCTAAC GAGATTGTGC CGGATTCGGA CTGGCCTCGC
AATGGTGATA TTGTAGTTGG CTTGGAACTT CAGGAACCAG CTGGATGGGT GCGCTTGCAG
AACGGCTACT ATCTACCCAT GCATAGTGAC GATGGGGAAG TAGCCTTTTT GCACAAGGTT
TCCTCGCGAA CGCAGCCTTC CAATTCGGAG TTGAAGCGCA TCGGATCCAA TACACCCTTG
TTTCGTGGGG CAGTTGAGAA AACGGATGTC TCATCTTTGT TGAACGGAAG GATTGAACTT
TCACCCGAAT CCGCCACAGC CACCGCAACA TTAACCAAGG AAATTCCCGA AGAAATGCGA
AGTGACGAAA CGTGCCGGGC TTCTATTCAT ATGGACGCGA TGGCCTTTGG GATGGGCTGC
TGCTGTCTCC AAATTACTTT CCAGGCCAAG GATATTGAAG AAAGCCGATT CATATATGAT
CAGCTTGCAG TTATGGCGCC CATTATGATG GCGCTGACGG CTTCGACTCC GATCCTGAAG
GGTCGCTTGG CGGATACGGA TGCCCGGTGG GGCATCATCA GCGAAAGTGT CGATTGCAGG
ACACTGGCGG AACGCGGCCG AGAGGATCCT GATGCTCCGT ACGAAGATTA CAATCGTAAG
GGCCAGAGAC GAATTTACAA GAGCCGGTAC GATTCTATCA GCACCTACAT TTACCAGGGC
GTTTTGTCGT TGAAGGACGA AAAAAGTACT GGGCTAGCCA ATCGTGTGTT GAATATTTAC
AACGACATTC CGGTCCCTAT TGACGAAGAC AGCTATAAGC AACTTCGTGA TGCTGGTATT
GATCCAGCGT TGGCGCAGCA CGTTGCACAT CTCTTTATTC GTGACCCACT CGTAGTCTTC
AATGGCGCGG TCGAGGAGGT GGACGACGAT ACTCAGACCG AGCATTGGGA AAGCATTCAG
AGTACCAATT GGTGAGTTGA CTTCCCGTGA TTTCAGAGGA ATATATGCAG TGAAATATCT
TACACATCTC GCAACAGGCA AAGTGTCCGG TGGAAGCCTC CGCCGCCACG CAACAGTCCT
AATGACCCCC ATATTGGCTG GCGTACCGAA TTTCGTAGTA TGGAATTGCA GTTGACGGAT
TTTGAAAATG CTGCATTCAC GGCGTTTATT GTGCTCTTAA CCCGGGTTAT TTTGACGTTT
GATCTGAACC TATACATTCC GATGAGCAGA GTTGATGCAA ATATGCAACG AGCGCATAGT
AGGAATTCAG CTGCCAAGGG AAAGTTTTTC TTTCGGCGTC ACATGGCGCC CTTGCAGGAA
GGTGATGATG GATATGGCGT CAAGTTTACT TCCATGTTCG CTCAAGCAAA GCGAGGAGAC
GACCCTCTAA TGAGTCCTAT ACAGGACGTC AACGGTCATG TAGGCGTCGA AGAAGTGGAT
GACGTCGTAA GTGACCAACG CCGCAAGTCC CCTTATGCTC CCGGAAGTTC TGAAGAAAAT
TCGTTTGAAG AAATGACGAT GAACGAAATT ATGAATGGCA AGGGAGATCA CTTTCCTGGT
CTGATTGTGC TGATTCTGGC GTATTTGGAT CACATCAACT GCGATAAGGT CACGCTCAAG
CGCTTAGAAA ACTATCTGAC GTTTATTGCC AAGCGCGCAA CGGGTGAACT CGTCACACCT
GCGACCTGGA TGAGGAATTT TGTCCGGAAT CATCCTGCAT ACGAACAAGA TTCGATTCTA
TCAGATGAAA TCGCCTACGA CCTCATGATT GCCTGCCGTG ACATCGGCCA AGGGAAATTG
CACGTTCCCG AATTATTGGG AGACAACATT ATTGATCCAA TTACAAGTGA AGGTGCTTAC
GATGTCAAAC TTGACTCGAA GCGCGTCCAA AACGATCGCA TTCTTGATTT ATTGCGACAA
TACACGAAGC GCAAATCCTT TTCGGCGCAT GGCGCGATGA ATGTCGGTGA CGCGTGAGAG
ACAATTGTAT GATGATGTTG TGCGTCTTTT CTGTAGTGGG CTGATTTTTG AGTCCGATCA
GTTTCACTAC ACTCCACCGC TATTATCGAA GAATTTTGGT TGCAGCGCAG TGGACCTAAA
CTAGAATATG TTTTCAATTG TCATTTAACA CGCAATGCCA CTTAACTTCA ATTTTTCATT
AAGCAGC
 
Protein sequence
MRRSQCIVSS NKKTTGIKTL LPRFQAFLWC LVFSSRFLSA EGLAIFMGLL KVGVPKSWDD 
SKKDLDYIRK AGVRQFVSTY NRVKDFKGDE LLWGDEIEYG IFHMDHNAKK VRLSLRAKEI
MDELNRKETL HSQIVEGCNW VPEYGAWMVE ATPDRPYTGY TTDLLRVERN MRLRRKRMLT
VLSEEEVAPT ISSFFMLGAQ GDDGTIPSTT VGGPVTESEY ISDGIINPHP RFGTLTANIR
QRRGSKVNIR VPLFRDTRTP EYIDFEPPKG SEIPEEMRSD ETCRASIHMD AMAFGMGCCC
LQITFQAKDI EESRFIYDQL AVMAPIMMAL TASTPILKGR LADTDARWGI ISESVDCRTL
AERGREDPDA PYEDYNRKGQ RRIYKSRYDS ISTYIYQGVL SLKDEKSTGL ANRVLNIYND
IPVPIDEDSY KQLRDAGIDP ALAQHVAHLF IRDPLVVFNG AVEEVDDDTQ TEHWESIQST
NWQSVRWKPP PPRNSPNDPH IGWRTEFRSM ELQLTDFENA AFTAFIVLLT RVILTFDLNL
YIPMSRVDAN MQRAHSRNSA AKGKFFFRRH MAPLQEGDDG YGVNSEENSF EEMTMNEIMN
GKGDHFPGLI VLILAYLDHI NCDKVTLKRL ENYLTFIAKR ATGELVTPAT WMRNFVRNHP
AYEQDSILSD EIAYDLMIAC RDIGQGKLHV PELLGDNIID PITSEGAYDV KLDSKRVQND
RILDLLRQYT KRKSFSAHGA MNVGDA