| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_1870 |
|---|
| Symbol | TRD4 |
|---|
| ID | 7200137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011674 |
|---|
| Strand | - |
|---|
| Start bp | 678615 |
|---|
| End bp | 680131 |
|---|
| Gene Length | 1517 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | TRD4 |
|---|
| Protein accession | XP_002179486 |
|---|
| Protein GI | 219117383 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAG GCAGTCAAAC GTTCCCTGTT GCACAGCATC ATAATCGTGA CAGAGTATAC
TCACTGTATG CCGTAGCTCT AATTTTTGCC GTCCCGGCAC TGGGCGGTTT TAATTTTGGT
TTTGACATTG GCGCTACGTC GTACGCCATC GTCCAAATGC AGTCTCCTGT CTTGTCTGGA
GTGTCATGGT TTCATACTGT TTTATCTTCG CCAATATTAC GCGGTACTAT TCTGTCATCG
GGATCGGCAG GTGCTTTGAT TGGTAGTTCA CTGGCGTTTG CGATCGGTGA CAAGATTGGG
CGAAGACGGG AATTGCAGCT GGGATCTTTA CTGTATCTCC TCGGAGCATT GCTAGAAGTC
TGGACGGCCC AATCGAGCAG CTGGGGAGCA GTACTTGGTA TTACTGTTTT GATTTTAGGA
AGAGTCGTTT ACGGAATCGG CATCGGCATA TCGATGCATG CGGCGCCGAC ATATATTGCC
GAAATGGGTC CTTCCAGTAT TCGAGGTTTG TTGGTATCGC TCAAGGAAGC ATCGATTGTT
CTAGGTATTC TCACCGGATA CATGATTGGA TACGCGTGCT CGAAACATAC TGGAGGATGG
GCGTGGATTT ATGCATCGAG TACTATGTTT TCGATGCTTA TGCTGATATT GTCAACCAGG
ATTCCGAGAA GCTGTCGATG GCTCATGCTG AACAATATGG AAGACGAAGC GCTCGAATCA
CTGCAATTTG TGTTCACAGA GGAGCAAGCT CAGGTAGAAT TTTCCAACAT GAAACAATCA
CACGAGGAAG CGTGTGCGTT GCTAAGCGAT GAAGAGGAAG AAAAGACCGT CTGGCATCGG
TCATACCGAG CGCCGCTCAT TGCGGGCGTT GGACTTGTCG TACTCCAACA AATTACCGGA
CAACCGTCTG TCTTGTCCTA CGCCACTCCA ATTTTCCGAG ATGCGGGATT ATCGGACTCT
GCACCCGTAC TTCTCGCACT TTTCAAGTTG CTGGCGACTC TGTCGGCAGC TGTCACAGTC
GAAAAATACG GAAGGAAAAT GCTGTTGTAT ACAGGCTGTT CCCTAATGCT CATTGGGCTA
ACTATTCTTT CCTTTTCTCT GGATGGTGGT ACCTATATTG CCAAAGTGGC TGTCTTAGTG
GCCATGTTCG TCTATATCGG TGGTTATCAA GTGGGTTTTG GTCCCATCAC GTGGCTCCTT
ACCAGCGAAC TATATCCTTT GAGCATCCGA GGCCAAGCAG TAGCTATTGC TGTACAAATG
AACTTTTTGC TTAACACTGC AGTCCAGTTT GGAGTTCCGC TGTTGCAAGA AGTCATTGGA
TTGAGCTTCA CGTTTGCATT ATTTGGTATA CTTACAGCGT ACAGGTAAGT GAGCCGGACA
AGTGTATGGT CCCAGATAAT GTCCGTGGTA TCTCTTTCAT TCTAACACAT TGTCAAACGA
TTGTTCCACT TGACAGCATC TTTTTTGTTG CAACTCGTGT ACCAGAAACA AAAGGTTTGT
CCTTGGAGGA AATTGAG
|
|---|
| Protein sequence | PVAQHHNRDR VYSLYAVALI FAVPALGGFN FGFDIGATSY AIVQMQSPVL SGVSWFHTVL
SSPILRGTIL SSGSAGALIG SSLAFAIGDK IGRRRELQLG SLLYLLGALL EVWTAQSSSW
GAVLGITVLI LGRVVYGIGI GISMHAAPTY IAEMGPSSIR GLLVSLKEAS IVLGILTGYM
IGYACSKHTG GWAWIYASST MFSMLMLILS TRIPRSCRWL MLNNMEDEAL ESLQFVFTEE
QAQVEFSNMK QSHEEACALL SDEEEEKTVW HRSYRAPLIA GVGLVVLQQI TGQPSVLSYA
TPIFRDAGLS DSAPVLLALF KLLATLSAAV TVEKYGRKML LYTGCSLMLI GLTILSFSLD
GGTYIAKVAV LVAMFVYIGG YQVGFGPITW LLTSELYPLS IRGQAVAIAV QMNFLLNTAV
QFGVPLLQEV IGLSFTFALF GILTAYSIFF VATRVPETKG LSLEEIE
|
|---|
| |