| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_44577 |
|---|
| Symbol | |
|---|
| ID | 7197601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011672 |
|---|
| Strand | + |
|---|
| Start bp | 953752 |
|---|
| End bp | 955522 |
|---|
| Gene Length | 1771 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178332 |
|---|
| Protein GI | 219115073 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000753938 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GATGAGACTC ACTTTTGCGT TGGGAGTCGA TGCCCTCCGT TCGCGACAGT CGTTGACGCA
TATATTCTTA TCGTCGCCAT TGAAGAGGTA CAATTGTATT TCTACGTATT CTTCAATTTC
ATTTTGAGTT TCTTTACTTT CTCCGGGATA AACGCCAGAA ACGAAGATAT TGTTCAAGAC
ATTTTCAGTA GTTTGAAAGA CAGATTCTGA ATTGATTGTC CTCTGCCTAA AGCAGGTGGG
CAGTCATATC GATAAAACGG CTTCGCAACT AACTTTCTTT TTGCAGGCGG CGATGGGGCA
ATGTTCCACG TTGCCTGCCG AGGGGAGAGG CTCTTCTTCA GTCGCTTCAA GATACGAAAA
TATACATGAT CCTGAACAGC GGCATCGGCT CCGTTACGAT AGCCGGAAAG AAAGCATGGA
TTTCGATCGA TTATCTTCGA CCGCGGAGTA TCCCCCACGT CGAAACCAGA ATAAGGGACA
CAGTCAAACC CAAAAGAGCG AAACCTTTCG TCAAGACACA GAGCATCCTC AAGCGAGAGA
TCCGGATCAC GAGCGCAACT TTCTCAAAAA AATCAATCCC ATGAATTGCG ACGCGCGGGA
TGAGCCAGTA CCGATCCAAG CAACACCTCC CCCGCCGTCA AATGCCGTTC GGCAGCGATG
TTACAAGTTA AACTTAGATT CCGAATTCAC AAATCTCTCA AGCTCACAGC GGCAGCAGCT
ATGTTTGGGT CCATTTTCTG AGCCTCCTCC GATGCTCACG TACAGTTCGT CTGAAGATTC
CAGCACCGGG GTCGACGATA CGATTGTGGC AATGAAGACA GCACAAATAT TCAGGGGTAT
TACCATCGGC CGTGACGGAG CAATTTTATC TCAAAATGCG CGAGCAACAA GAAACAACAG
AGGAAGCAAA CAAAAAAGGA GTGAGAAATC TCGTCAAGCA GCCAAGATTG ACAAAGCGAA
AGATCTCGTG GAAGAAACGC TGGCTACGGG GAAAGCTCCC GACTCTGATG ATCCTGTCAA
CATGGTCTCA CTGTTCATAG TTGGCCAATA CGACGATATG AAACATCTCG TCCGAGACGG
CTCGAAAAAG CTTAGAGATG CCGATGGTCT CCCAGATGAA ACTCTGTATT CCACCAATCT
TCATCGAAGT CCGTCAAAGG ATGCATTCTC CACAAGCAAG GAATCAGCCA TGATCAGTCC
TCGAAAACGT GCGTCGCCCC ACTATATTTC TAGCCAACGA ACGGCTGCCA TGCACTGTTC
ACATCAGATG CAGGTGACTG GGATCCCGTA TTCAGCGCCG CCAAAATTGA AATCACATCC
ACGCGACACA CAGACTATGC GTCGGGAGGA ATACCCTGGA CCACGCATGC ACTCCTGCAA
CAATTTTGAG GATTCCAGCC ACGTTCGTGG TACAAGCGAC GGAGCTGACT GGACTCATGC
CTGGAACCTA TGGAACTGTG GGGTAGTGGG AGCGGCAAGT CCAGTGGACA CGCGTAGCCC
AAGGGAACGC AAAACACCGA TTTTTGAAGG TCGTGACTCA CACTACAACA CTGTCCGTGA
CAATGGCGGA ACACGTCGTG CGGGATAATT TTTCCTCACA GGCAAAGGCA AAATGGCTAC
ACTATGAATT ACATCAACTC GGACAGACAG GCTGAGTACC ATAGATAATG CGGTATGCTG
TTAAGCCGCG TGTCCTTTCG CTTATTATCA CACGCCTGTA TTTTATATCT CATGTTTCAT
TAGTTACCGG TTAGAAAGGC ATTTTCCCGT C
|
|---|
| Protein sequence | MGQCSTLPAE GRGSSSVASR YENIHDPEQR HRLRYDSRKE SMDFDRLSST AEYPPRRNQN
KGHSQTQKSE TFRQDTEHPQ ARDPDHERNF LKKINPMNCD ARDEPVPIQA TPPPPSNAVR
QRCYKLNLDS EFTNLSSSQR QQLCLGPFSE PPPMLTYSSS EDSSTGVDDT IVAMKTAQIF
RGITIGRDGA ILSQNARATR NNRGSKQKRS EKSRQAAKID KAKDLVEETL ATGKAPDSDD
PVNMVSLFIV GQYDDMKHLV RDGSKKLRDA DGLPDETLYS TNLHRSPSKD AFSTSKESAM
ISPRKRASPH YISSQRTAAM HCSHQMQVTG IPYSAPPKLK SHPRDTQTMR REEYPGPRMH
SCNNFEDSSH VRGTSDGADW THAWNLWNCG VVGAASPVDT RSPRERKTPI FEGRDSHYNT
VRDNGGTRRA G
|
|---|
| |