Gene PHATR_43905 details

Gene Information

• Locus tag: PHATR_43905
• ID: 7204311
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: +
• Start bp: 390336
• End bp: 394065
• Gene Length: 3730 bp
• Protein Length: 1038 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002186051
• Protein GI: 219112935

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.352902
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGAGT ATACGCTCGA AAATCTGCCC AGGAAGGCGA CCATCGAGGA GCTCTCGGCG 
TATCTTGCAA AGGTTCAGGT TTCGTTTTCC AGTGTCGGTC CAATCCACAA GGCCGGAAAG 
GGGTCTGTCG CCAAGGTAGT GTTACCAAAA GACATCGACC TCCGAAAAAC GAGAAAGGAA 
TTCTTGACAA GCCCTTTGGA AGGCTGCGTT GTGCAACTTC ACTGCAAGTC ATTCATTGCG 
GAGATGAAAA ACAATAAGTC CAAAAATGGC TTGGCGGACC GGACTTTCCT AAAGAAACCA 
CCACAAGGTA CTAGCGGTAA CTCACGCCGA TCGAAAGACA GAGTTCCAGG CCCCTCTGGG 
AAATTCAAAA AGCATTTTCA TGCCAGGAAG GATCACAAGG TGGCTACCCG GGTTGTTCCA 
GACTTCATCC CAACGCAAGA CAGGGTCGGA CACACAGGAC GCCAGGATGA ACGGTTGACG 
ATGAATCGGA CGCGTCTCGT TCCCACGAAA CAAGTCAACG ATCAGGTGGC AGTTACTTTC 
GCTGAACTTG ACCGCAAGAT CCCGTCCCCC AAGGAGATGA AAGAAATCCA AGCTCAAGTT 
CTCAAAAGTC GAAAGCAGGC AGAAGCTGAC AAAAATGGAA TCTCGATTAG CAAAGCACCG 
ACCGAAGCGG ATATCGTTCC TTTGCACAGA GGATACTTCT TTTCTTTGAG GATCACCTCG 
ACCACTGCGC CAGCTATTCT GGAGAAAATC GATATCGGTG GTACTCACGG GAAATCTTTC 
CGATACGTGG GGCAGAAATT GCCCCACACC GTTGCCGAAA AGACCGAAGC CAACTTCATC 
TTTCTGCCAA ATTTCCCCGG AGTCTTTCGT GTCGGCCTGA CCTTTCAGTT TTCTACATGC 
TCCATTTTGC GAACTCTAAC TTTCAAAGGA GGCGACAAGA AAATGCATAA AGAGGTGGAG 
CCTCAAAGCC TATACGAAAG AAAGATATCT AACATACACA GCCAGAAGCC GATAGAAATA 
TTCGCCCCGC CACCGGAAGG AAATCACAAC GGTACCAGAA ACCCTTTCGC AAACCTCCCA 
CTCTACAAAA TTCCAGCAAA CGTGGAAAAA ATGATCGGGA ATCCTGAATT TGAAAATGCG 
ATTGAACTCC CTCATGAGGA CGGTAGGAAC TATGCAAAAT TCTACCAGAG TATGCTTTGG 
GCAAGCGAGT TGCAGGCCTA CCGCGATATC AAGCTTTTCG ATCTTGAGGG CGCCAAATTG 
AAGAGAGAAG GCAAATTCTT TAAACTGACT GTTGAAGGCC TAGCCGAAGG CCGCCCTTCC 
GTTTTACGAG GCGATATGGT AAATGTCACT TGGAATCGTC GTTTGTACCA GGGCCGTGTC 
GAACGAACGC TATTGCTTGA AGTAGTTCTG GAATTCCACC AATCCTTTTC TCGCTCATTT 
AATCCAACGG CTGACTCCGT TGATGTGAGA TTCACATTCA GCCGCATGAC ATTCCGTATT 
TCTCACGAAG GAGTGATCGA AGCACAGCAC CAGATGAAGG ATCCACTGTT TCCTAATATT 
GAAAGTGTTG CCTCAATCAA AGGTACACAA GTCGGGCGGG ACAATTCGTC GCGTCTGGAA 
TGGGGAAATA CTGCTTTGAA CGACGAACAA AGACTTGCTG TTACAAAAGC TGTGGAGGGT 
GCGCTGCGTC CACTCCCTTA CATTATCTTT GGTCCTCCTG GTACAGGTAA GCGCGAGTCT 
ATTGATGTCG AAAGCGTCGC AACCGAGTCC GTAGCCGTAA CACAGTGATC TCTTCTTTGA 
TGCTTCTAGG GAAAACCACC GCGGTTACCG AAACTATCCT CCAGTTAGCA AGGCACAAAA 
ACGGACTAAA AATTCTTGTC ACTGCACCAT CGAATGATGC TGCCGACGCT CTCGTTGAAC 
GACTGGTGTC GTACTTTTCT CCATCTGACC TCAAGCGCGT GATAGCGTAC AGTAGAAACG 
TAGATAGCGT CCCCTCTTTG ATTCGCAAGT ATACTAAGGA AGGGTTGACC AGTGATGGGC 
AGCTCAATCA GATTTTGTCC GGGCGTATTG TGGTTTGTAC CGTCAATTTA GCGGCGCGGT 
TCTCTCGGCT CGGCGTTCCT CGTGGCTTTT TTGATGTCCT CTGTGTCGAC GAGGCTGGAC 
ATGCTAGTGA ACCCGAAGTA GTTTCAGTAG CATCGACGCT ACTAAATTTC AGCCATGCTG 
ACGAACAACT CGGCGCCGGT CAAATTATTT TGGCAGGCGA TCCGAAACAA CTTGGTCCAA 
TCGTCACTTC TGATCTCTGT CGGCGCTATG GGATGTCTAC ATCTTACATG GAACGTCTAT 
CTAAGCGTTC AATCTACTAC AAAGAAGACG GACAATACCC GGCGGAATTA ATTACGAAGC 
TGGTCCAGAA CTATCGATCC CATCCTGCAA TAATCGAGCT TCCGAACAAG ATGTTTTACG 
AAAACGATTT ACTGTGTCGT GGGGATACTA AATGTACTCA TAGCCTCGCG AACTGGGAGA 
AATTACCTGT GAAAGGCTTT CCAGTTATGT TTCATTCAAT GACGGGTGAG AATCTCCGTG 
AGGGATCCTC TCCATCTTGG TTCAACCCCG AAGAAGCAAT TCAGTCTTTC AACTACGTAG 
ATATCCTTTT AAACCACTCT CGGCCACCCT TAAAGCAAGA TGATATTGGA GTGATAACTC 
CATATGCACG CCAGGCCCAG AAGATTCGTT TACTGTTGAA GAATCGTGGC ATCAACGACG 
TGAAGGTGGG ATCAGTCGAA ACCTTTCAAG GACAAGAGAG GCAGTGCATC ATTCTGTCGA 
CGGTCCGATC AGAGACTGAA CACATCAAGC ATGACCTGCG ATTCAACCTT GGATTTGTCG 
CCAGCGCCAA ACGCTTCAAT GTGGCACTCA CCAGGGCCAA AGCGCTTCTC ATAGTGATCG 
GTTGCCCGAC AGTGCTCAGC CTTGACAAGG ATCATTGGCT TCCATTTCTA AGGTACTGCC 
GTGAGAACGG CTCTTGGGTA GGTCAGCCTT GGAAGGAACC AGAAACGGAC GTCTCTTCAG 
ATCCGGGTAT TGCTTCTCAA CTTGAAGACA ACATTCGGGA GTGTATCGAT AGCCCGAGCC 
AGGTAGTCGA GCAAGAGGGA TTAGCATTTT CTGGTAGGGT TTTAACAGTA AATGCAGGCG 
ACACAGATAA AACCTGTTAA AAAAGCACTT CCCTCTTTTG GCAGACGATG CAATTTTGCC 
ACACCATGGA CAGCAAGCGA GTTACAAACA GAAGTACAGG AAAAAACAAT GCAACTGCCC 
AGCGGAGGAC ACGAACTGGG CCTCTTTGCA CTATAGACAT CAGCAATCGA GCCACTAGGT 
GGCTTGCCCC CTCGACTTTT GGGTTAACAA GGAGCTGGAG AGCCATTCCA GGCGCAATCC 
ATCTCTGAAA AAGTGGTTTT GGCTTAAGAA CTCCTGTAAG CTCGTCAAAG TCTCCAGTGA 
AAAAGGTAAC AAACACATCC ATGAAGCAAA TAAAGCCCAC AAAAGCGAAG AACCTGTGAA 
TGCCGAATTC GAGCACCTGA ATGTATATAG TTTGTAGCCT CTCGTAGTAC TCCGAACAAT 
ACCAAGGCAG GGAGTCTTGG GCGGCATGAC GATGCTTTCT CTTCAAGTAT ATGATTTTGC 
GTTGGATGGC TCGTAAGATG AGTGGTCCCG ACAGGACACT ATTTTCTACA GCACAGACTT 
CTTGTTCCCG 

 

Protein sequence

MPEYTLENLP RKATIEELSA YLAKVQVSFS SVGPIHKAGK GSVAKVVLPK DIDLRKTRKE 
FLTSPLEGCV VQLHCKSFIA EMKNNKSKNG LADRTFLKKP PQGTSGNSRR SKDRVPGPSG 
KFKKHFHARK DHKVATRVVP DFIPTQDRVG HTGRQDERLT MNRTRLVPTK QVNDQVAVTF 
AELDRKIPSP KEMKEIQAQV LKSRKQAEAD KNGISISKAP TEADIVPLHR GYFFSLRITS 
TTAPAILEKI DIGGTHGKSF RYVGQKLPHT VAEKTEANFI FLPNFPGVFR VGLTFQFSTC 
SILRTLTFKG GDKKMHKEVE PQSLYERKIS NIHSQKPIEI FAPPPEGNHN GTRNPFANLP 
LYKIPANVEK MIGNPEFENA IELPHEDGRN YAKFYQSMLW ASELQAYRDI KLFDLEGAKL 
KREGKFFKLT VEGLAEGRPS VLRGDMVNVT WNRRLYQGRV ERTLLLEVVL EFHQSFSRSF 
NPTADSVDVR FTFSRMTFRI SHEGVIEAQH QMKDPLFPNI ESVASIKGTQ VGRDNSSRLE 
WGNTALNDEQ RLAVTKAVEG ALRPLPYIIF GPPGTGKTTA VTETILQLAR HKNGLKILVT 
APSNDAADAL VERLVSYFSP SDLKRVIAYS RNVDSVPSLI RKYTKEGLTS DGQLNQILSG 
RIVVCTVNLA ARFSRLGVPR GFFDVLCVDE AGHASEPEVV SVASTLLNFS HADEQLGAGQ 
IILAGDPKQL GPIVTSDLCR RYGMSTSYME RLSKRSIYYK EDGQYPAELI TKLVQNYRSH 
PAIIELPNKM FYENDLLCRG DTKCTHSLAN WEKLPVKGFP VMFHSMTGEN LREGSSPSWF 
NPEEAIQSFN YVDILLNHSR PPLKQDDIGV ITPYARQAQK IRLLLKNRGI NDVKVGSVET 
FQGQERQCII LSTVRSETEH IKHDLRFNLG FVASAKRFNV ALTRAKALLI VIGCPTVLSL 
DKDHWLPFLR YCRENGSWVG QPWKEPETDV SSDPGIASQL EDNIRECIDS PSQVVEQEGL 
AFSGRVLTVN AGDTDKTC