Gene PHATR_41812 details

Gene Information

• Locus tag: PHATR_41812
• Symbol: SDH1
• ID: 7204112
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: -
• Start bp: 1284704
• End bp: 1287657
• Gene Length: 2954 bp
• Protein Length: 638 aa
• GC content: 51%
• Product: succinate dehydrogenase flavoprotein
• Protein accession: XP_002186498
• Protein GI: 219113829

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAAAA CACGCCGTAA ACCAACTACG AAAATCCGTG ATTGTAAGTC CAATTGTCGA 
ATTCCAAGTC CCCTTGTACC ATGGTCGATT CGAACGGACA GGTAATTTCC AAAATGGAGG 
AACATAACCC TATAGTTATC ATTTTCATTA GGTTTCTCAA TGTCCTGTCA CTGTGACACT 
GTCAACTTGT TTCGTCGACG AGTCTGTTCC ATGTCCGTGT TCGGGGACGG AAAGCGACAG 
CGGATGCGAA GCTTCCTCCG AGCTCTGACT CTGCTTCCAC TTGGTTTACT TTCTTCGATT 
GGCTTAGGTA TATCCGATGT GCCGATGTTT CCCTTTTGGA TTGGTTCAAA CCGTGTCGGA 
GTGCCTGGAT CCGATTGCAT TCTGTTTTCT TCGTCTTTCG TGATCGAGGA ACACACAGCA 
GCATGAAGTG CAGTGAGTGC TGTACTGCGC AGTGCTGATT CGGTCGTCTC GGCGAATGTA 
TCTGCCGATA AATTTCACGG TGAGAAGCCA TCTGGCTGTC GTCCCCCACC ACGGTAACAT 
ATCCGTTCTG TGCGCACAAA TTATAATACT GCAAACGTAC ATACTTTGCA CTAAGAGAAA 
CACAGACTAG TAGCAAGTCT CACACGGAAC AGTGGTACAA TTGACTCTTC CTCCGTGTCA 
AAAAGCCTAA CTGTAAATTC GAGTCTCCCG ATTCCTGGAG TCACAATCGC TTCCCTGAAA 
AATAGTGTTT GTTGACCGCA CAAGGGTACT ACATTACCTA TCGCCAACAT GTTCGCGTCG 
ACACTCCGCT CGTCTCTGCG TCAACAGCAC CGACGCGTCG CCGTCACTTC CGTCGGATCG 
AAATCTCTGT CGACTTCACC TCATTTGATT GGTGATTACA CCGTAATTGA TCACACGTAC 
GATGCCGTCG TCGTCGGTGC CGGCGGCTCC GGATTGCGTG CCGCCATGGG CCTGTCCGAA 
GCCGGATTCA AGACTGCGTG TGTGACCAAA CTCTTCCCTA CACGCAGTCA CACCGTTGCC 
GCGCAAGGAG GCATCAACGC TGCGTTGGGA AATATGGGCG AGGATGATTG GCGCTGGCAC 
ATGTACGATA CCGTCAAGGG TAGTGATTGG TTGGGTGATC AAGGTACGTT TATTCTCTGA 
AGTCTTATTA GCTTGCACAA ACCACTGTTG GGAACTAGGT AGTCTACGCC GGGACTTTGT 
GTCTCACAGT CAAGCCTTTC GTCTCTCTGT CCCACGTGCA AACACATACA CACACGTACC 
CACAGACGCC ATTCATTACA TGTGTCGAGA GGCTCCCAAA GCAGTTTTGG AACTGGAGGA 
ATTCGGTATG CCCTTTTCCC GTACCGAAGA AGGCAAAATT TACCAACGTG CCTTTGGCGG 
ACAGAGTCTG GATTTCGGTA AGGGTGGACA GGCCTACCGC TGTGCGGCCG CCGCCGATCG 
TACCGGCCAC GCCATGCTGC ACACGCTCTA TGGACGTTCT CTCGCCTTCG ATACGACATA 
CTTTATTGAA TACTTCGCCA TGGATCTACT CATGAACGAT CAAGGTGAAT GCGTCGGAGT 
TGTGGCCCTC AACATGGAAG ACGGCACCAT TCATCGCATA CACGCCAAGA ATACCGTCCT 
GGCCACGGGT GGCTACGGAC GAACCTACTT CTCGTGCACC TCCGCTCACA CGTGCACGGG 
CGACGGTAAC GCCATGGCCA TGCGGCAGGG CCTGTCCAAC CAGGACAACG AGTTTGTGCA 
GTTCCATCCG ACCGGAATTT ACGGAGCTGG CTGTCTCATC ACGGAAGGCT GTCGCGGAGA 
AGGTGGTATT CTGCGCAATT CTGAAGGTGA AAGATTCATG GAGCGATATG CCCCGTCGGC 
CAAAGATCTG GCATCGAGAG ACGTCGTTTC ACGTTCCATG ACCATGGAAA TACGCGAGGG 
ACGGGGTGCA GGTCCAAAGA AGGATCACGT GAGTCGTTAA CTGTGAATGT ATCCTGTGCT 
CATCGTGTAT ACATGTTTCC CTTTGTTGTC CTGCGCCGTC CCTAGGTATT TGAGAAATTC 
TACGTATTGT CTAACCGTTC CATCTCATCG TTGTCTCGTA GATCTATCTA CACTTGGATC 
ATCTTCCTCC GGATCTCTTG GCAGAACGAT TGCCTGGAAT CAGCGAGACG GCTGCCATTT 
TCGCCGGTGT TGACGTGACC AAGGAGCCTA TTCCTGTTTT GCCTACAGTT CATTACAACA 
TGGGGGGTAT CCCGACCAAT CACTATGGGG AAGTTATCCG AACCAAGTTT GATAAGGATG 
GAAACTTTTC CAAAGACGAG GTTGTTCCGG GACTCTTTGC ATCGGGTGAA TCTGCGTGTG 
CTTCCGTTCA CGGTGCCAAT CGGTTGGGAG CCAACTCTTT GCTAGACATT GTTGTCTTTG 
GGCGTGCTTG TGCCAACCGC ATTGCCGAAA TCGCAAAACC CGGGGACAAG ATTGCCGATG 
GTCCTTCCGA TGTTGGTTTT GGTAGCATTG CCGAACTCGA CAAGCTTCGA TACGCGGAAG 
GACATGCCAC AACTGCCGAT ATTCGCTCCG AAATGCAAAG CGTGATGCAG GAACACGCTG 
CCGTCTACCG CACTACCCAG ACGCTGGCGG AAGGAAAGAC CGCCATTGAC GGCGTCGTTG 
ACAAATTCAA AGACATTGCC GTGACTGACA AGTCTCTGGT GTGGAACACG GATTTGGTCG 
AAACTTTGGA GTTGCGCAAC TTATTGGCCT GCGCATCGAC CACCATGTAT GGTGCCGAGA 
ATCGCAAGGA AAGTCGGGGT GCCCATGCTC ATGAAGATTA TCCCACGCGT GACGACGAAA 
ATTGGATGAA GCACACATTA TCTTACTTTG ACGAAAGCAC TGGACGGACC GAAATCAAAT 
ACCGTCCAAT CCATTACTAC ACTCTGGACG AAGATGAATG TAAAACTGTC CCTCCGGTAG 
CTCGTGTTTA CTGA 

 

Protein sequence

MPKTRRKPTT KIRDLHRRVA VTSVGSKSLS TSPHLIGDYT VIDHTYDAVV VGAGGSGLRA 
AMGLSEAGFK TACVTKLFPT RSHTVAAQGG INAALGNMGE DDWRWHMYDT VKGSDWLGDQ 
DAIHYMCREA PKAVLELEEF GMPFSRTEEG KIYQRAFGGQ SLDFGKGGQA YRCAAAADRT 
GHAMLHTLYG RSLAFDTTYF IEYFAMDLLM NDQGECVGVV ALNMEDGTIH RIHAKNTVLA 
TGGYGRTYFS CTSAHTCTGD GNAMAMRQGL SNQDNEFVQF HPTGIYGAGC LITEGCRGEG 
GILRNSEGER FMERYAPSAK DLASRDVVSR SMTMEIREGR GAGPKKDHIY LHLDHLPPDL 
LAERLPGISE TAAIFAGVDV TKEPIPVLPT VHYNMGGIPT NHYGEVIRTK FDKDGNFSKD 
EVVPGLFASG ESACASVHGA NRLGANSLLD IVVFGRACAN RIAEIAKPGD KIADGPSDVG 
FGSIAELDKL RYAEGHATTA DIRSEMQSVM QEHAAVYRTT QTLAEGKTAI DGVVDKFKDI 
AVTDKSLVWN TDLVETLELR NLLACASTTM YGAENRKESR GAHAHEDYPT RDDENWMKHT 
LSYFDESTGR TEIKYRPIHY YTLDEDECKT VPPVARVY