Gene PHATR_25856 details

Gene Information

• Locus tag: PHATR_25856
• ID: 7203900
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011671
• Strand: +
• Start bp: 1131738
• End bp: 1135361
• Gene Length: 3624 bp
• Protein Length: 997 aa
• GC content: 51%
• Product: predicted protein
• Protein accession: XP_002186189
• Protein GI: 219113211

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTGGAGTCA AAATTTCTGG TACCCTGGAC GTTCGCTACT AGCCCGTTCT TCACCAGCCT 
CACACCGAAA AGAGATTGTT GATCGTATAC ACGTATTGTG TAAGTATTCC CATACATTTG 
TACACATACA CTATACGAAC CGCACCCTTT TCGAGACTAG AGAAAAGACA CAACTTGCTG 
TTGTCTACAC CCAAAATCGT TGAACTCTCG TACGAGGACG ATGACGACCA GCCAAACGCG 
GTTGGCCTTG CTGTTGGTGG TGGTGGCGGC AGCATGGATG GAAGGAACAT CCGTGAACGC 
CTTTGCCCCC GCCGCTTACC ACAACAACGT CGCACGTGCG AAAACGTCGT TTCGTCCAGC 
CTTTCCTGCC ATTCCCGTCG GCCATGCTTC GACTCCGCAT TCGTTCCTTC CCCAGTCGAG 
TGCACCACGA AAGGCTTGGA CGTCGACCAC GTCCTTGCGC ATAGCGGCGG AAGACTTTTC 
CGAAGACAAG TACACCGAAG CGGCCTGGTC CTCCATTGCC GGCTTGACCA AAGTTTCGGA 
CTACTACTCC GCCAGTACCT TTGAAGCGCC CTTTGTGTTG GAATTCATGC TGAATCCGAA 
CAAACACAAC GGCGGAGAAG ACGCGGATGC CGCCAAGCGC GTCGTCGAGA AAATACTCAA 
CAAAGCGGGC GTTAATCTCA ACAGACTTCG TTGCGAACTC GATGAATATC TGGCCAAACA 
ACCGCGAGTT TCCGATCCCA CCAACAAAAT TATGGGACGA ACGCTGCAGA AGGTGCTGGA 
AACGGCACGG AATGGCAAAC AGGCACTCGG GGTAAGCCGA TTGGGTCTTC CCGGCGATGG 
CTTTTACAGT GTGTGTGTGG AATTGCGGTA ACTCTAACAC TGGTGTTTTG TATTGTATTG 
TGGTGCTACA GGACTCGTAC GTTTCTACGG AAGGACTGGT GTTGGCAATG GTCAAAGAGG 
ACGACAAGTT TACCCGCGAA GCATTGATGC GTCAAAACGT TAAATACACG GACGTGCTGG 
AAGTGGTCAA GGAAATGCGC AAAAAGAGCG GACCCGCCAT TAGTCGGAGT GCCGAAAGCA 
TGTACGATGC TCTCACCAAA TACGGCGTAG ACTTGACCGA ACGCGCGGAA CAGGGAAAGC 
TCGATCCGGT CATTGGACGG GACGACGAAA TTCGACGCGC CATCCAGATT CTGTCGCGTC 
GTACCAAGAA CAACCCGGTT TTGATTGGAG ACCCAGGGGT TGGTAAGACG GCCATTGCGG 
AGGGTATTGC CCAGCGTATG ATTGACGGAG ACGTCCCCGA CAGCCTCAAG AACTGCCGCT 
TGATTGGTTT GGACATGGGA GCTCTAGTGG CTGGCGCCAG TATGCGTGGA CAATTTGAAG 
AACGACTCAA GGCTGTCGTC GAGGAAGTCA CCCAGAGTGA CGGCGAAATC ATTCTGTTCA 
TTGACGAAAT GCATACCGTC GTCGGGGCAG GCGCGGCACA GGGGTCGATG GATGCGTCGA 
ACTTGCTCAA GCCTGCGTTG GCCCGGGGGC AACTCCGTTG TATCGGTGCC ACCACCATCA 
ATGAATACCG CAAGTACATT GAAAAGGACA AGGCTCTCGA GCGTCGCTTT CAGCAAGTCA 
TGATTGATCA GCCAACGCCG GAAGATACCG TCAGTATTCT CCGTGGCCTC AAGCCTCGTT 
ACGAATTGCA TCACGGTGTA CGTATTCGTG ACGAAGCTTT GTTGGCGGCG GCCAAGCTGA 
GTCATCGTTA CATTCCGGAT CGGTACGTGC AGTGGGAGTA GCTATCGAAT GATGGTATCC 
CGTCCGAGCA CGAACGCAAA AACTGACTCT CTTGAATTTC TTGATTTTTC AGATTTTTAC 
CCGACAAGGC AATTGATCTC GTTGACGAAG CCTGTGCAAA GTTGAATAAC GAGATCACAT 
CCAAGCCGAC TATTCTAGAC GAGATTGATC GCCGCATTAT TCAATTGGAG ATGGAACGAC 
TTTCGCTGCA ATCTGACTTT GAGAAGTACG AGGAAGACGG CAACACATTC AAAGCCACGA 
GCGAAAATTT CCGTCTGGCA AAGATCGATG AAGAACTTGG GTCACTGAAG TACGAACAGC 
AAGAGCTCAA TATGAAATGG ATGGCGGAAA AAGGTGCCGT TGACCGCCTG AAAGATGTGA 
AAGAAAAAAT CGCCAAGGTC AAGCTCGATA TTGAAAAATT TGAACGTGAA TTTGATCTGA 
ACAAGGCTGC CGAATTGAAA TATTCAGACC TCCCTCCTCT GGAAAGAGAG CTGGAAGAGC 
TGGAAAACAT CGGACAGTAC GATCTTGGAC CGGGCGAAGA ACGAATGCTG CGAGACGAAG 
TTGTCGCTGA TGATATCGCA GGCGTCGTGG CCGTCTGGAC AGGAATTCCT CCTGGAAAAT 
TGCTGGAGTC GGAGCGTGAT CGCATCCTTA CAATGGGAGA CAAGCTGCGC GAACGCCTCA 
TTGGGCAAGA CGAAGCTATT CGTGTTGTTA CAGAAGCAGT GCAGAGATCC CGCGCTGGTC 
TGAACGATCC TTCCAAACCC ATCGCTTCTC TGATTTGTAA GTTTTAGGAA TCGAAATGTG 
CTGAGGTGCG TCACTTGTTT GTTCCGGTCA TGTTTCTCAC GATTTGGTTG GTTTTGCACG 
AATAGTCTTG GGACCTACTG GAGTTGGAAA AACTGAGTGT GCCAAAGCAC TCGCAGAGTT 
TATGTTTGAT AGCGAGGATG CCTTGATCCG TATCGATATG TCCGAGTATA TGGAAAAGCA 
TACCGTCTCG CGATTGCTTG GAGCACCTCC CGGTTATGTT GGTTACGATG AAGGTGGTCA 
GTTGACGGAT GCGATTCGCC GCCGGCCGTA CGCGGTCCTG TTGTTTGACG AAATGGAAAA 
GGCGCATCCT GACGTGTTCA ACGTCATGCT GCAGCTTTTG GACGATGGTC GGCTGACCGA 
CTCAAAAGGA AACACCGTCA ACTTCCGCAA CACGATCTGC ATCTTTACGA GCAATGTGGG 
TAGTCAAGAA ATTTTGGACT TGAATGGTTC CAGCGAAATT GGTGACCAAG AGATTATGAG 
GTCTAGGGTG ACCGAGGCGA TGCGCGAACG ATTCCGTCCC GAGTTTTTGA ATCGTATCGA 
TGAACATGTC ATCTTCAATA GTCTGAACAA AAACAACCTG CGAGGTATTG TTGTTTTGGA 
AGTGCGACGA TTGGAGAAGC GCCTGGAAGA GAAGCAAATG CGTCTGGTCT TGCGAGAGGA 
GGCGCTCGAC TTTCTGGCCG AAGTTGGTTT CGATCCCGTG TACGGCGCCC GACCGCTCAA 
GCGAACCATT CAGCGCGAGC TCGAAACAGT GGTCGCTCGG GGAATTCTAG GTGGAGAATT 
CGTGGACGGC GATACTATTC TCGTGGATGT GGTTAATGAG CGCTTGAACG TGCGTAGAGC 
CACCAATGCG GATTCACTTC CAGCAGTATT CAGGCGCCCA ACGGAAGAAG AGGAAGTCGG 
AATGTTTGGC TGAATAAATT AAGTGGCGAG GTGCGCAATG TTACGTAAGA GTAGATGACG 
AGGACGAGAA ACGCAATGCC ATTGCATTAG GAAAATAAAG TACCGTAGTC GAGCCGCATG 
GCATTGACAC TATAAATACA ATAC 

 

Protein sequence

MTTSQTRLAL LLVVVAAAWM EGTSVNAFAP AAYHNNVARA KTSFRPAFPA IPVGHASTPH 
SFLPQSSAPR KAWTSTTSLR IAAEDFSEDK YTEAAWSSIA GLTKVSDYYS ASTFEAPFVL 
EFMLNPNKHN GGEDADAAKR VVEKILNKAG VNLNRLRCEL DEYLAKQPRV SDPTNKIMGR 
TLQKVLETAR NGKQALGDSY VSTEGLVLAM VKEDDKFTRE ALMRQNVKYT DVLEVVKEMR 
KKSGPAISRS AESMYDALTK YGVDLTERAE QGKLDPVIGR DDEIRRAIQI LSRRTKNNPV 
LIGDPGVGKT AIAEGIAQRM IDGDVPDSLK NCRLIGLDMG ALVAGASMRG QFEERLKAVV 
EEVTQSDGEI ILFIDEMHTV VGAGAAQGSM DASNLLKPAL ARGQLRCIGA TTINEYRKYI 
EKDKALERRF QQVMIDQPTP EDTVSILRGL KPRYELHHGV RIRDEALLAA AKLSHRYIPD 
RFLPDKAIDL VDEACAKLNN EITSKPTILD EIDRRIIQLE MERLSLQSDF EKYEEDGNTF 
KATSENFRLA KIDEELGSLK YEQQELNMKW MAEKGAVDRL KDVKEKIAKV KLDIEKFERE 
FDLNKAAELK YSDLPPLERE LEELENIGQY DLGPGEERML RDEVVADDIA GVVAVWTGIP 
PGKLLESERD RILTMGDKLR ERLIGQDEAI RVVTEAVQRS RAGLNDPSKP IASLIFLGPT 
GVGKTECAKA LAEFMFDSED ALIRIDMSEY MEKHTVSRLL GAPPGYVGYD EGGQLTDAIR 
RRPYAVLLFD EMEKAHPDVF NVMLQLLDDG RLTDSKGNTV NFRNTICIFT SNVGSQEILD 
LNGSSEIGDQ EIMRSRVTEA MRERFRPEFL NRIDEHVIFN SLNKNNLRGI VVLEVRRLEK 
RLEEKQMRLV LREEALDFLA EVGFDPVYGA RPLKRTIQRE LETVVARGIL GGEFVDGDTI 
LVDVVNERLN VRRATNADSL PAVFRRPTEE EEVGMFG