Gene PHATR_25840 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATR_25840 
Symbol 
ID7204049 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011671 
Strand
Start bp1055177 
End bp1059308 
Gene Length4132 bp 
Protein Length1128 aa 
Translation table 
GC content49% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002186457 
Protein GI219113747 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.908694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
AAAATCAATC ATAATTCGTA TCCTGGAAAA GACACGACAT TCAGCTGATA AGACTGACTG 
CATCTCATGT GGCTGACTCT GAGGCCCATC AAAATCAGAA GTGGTCTGGA TTCGGATTCT
AAAGTTACTT CCTCATCCTT TTACATTAGC GCTTCGCGTT CACACCTTCC CCTCCCCTCT
TCCAGATCTT CCCGAGAACT GTCGATCGAG ATGGAGGACA TAAATTTCTT CAAGCCATGG
GACAGACGAT CTATCCAGCC CATTGAACTC TTCCTTGAAT TTGCTGACAG TAAGCGACAA
TGAGAATCAC CAACTTTTCC ATCGTTGGGG CCGTGACTGC GACAGCCTTG GTTCTTTCTG
CTTGTAGTAT CAGCCAGGCC TTTTCCCCTC CGTTGCGGTC TGTTCCACGA ATCCGTATCA
ATGGTAGACC TTCGCCTTCT TTCCGCTTTG CGATCATTCC CGACAAGGAA ATCCAACAGA
AGACGAAAAA GGATACGACT CAAGCGTTTT TCGATGAAGA GGCCCCATCA CCTCACGATT
CGGGTGCAGG AATTCCTTAC GAGCGTCTTA CTATAGGAGT ACTGAAAGAA TCTTTCCCAG
GCGAGTGTCG AGTGTCACAA ACACCTGACT CGGTCCGAAC ACTGGTCAAA GAAGGATTTA
CCGTCGCCGT CGAATCTGGA GGTATGTATT GATCTAAATA TTCCAGAGTT TGCCTTGTCG
CTTCATTTCT GGTATCTTAC AAATATTCTG GATTGTAGCT GGCGACAAGG CCTCTTTCAA
CGATGCAGCA TACCTAGAAG CCGGCGCGAT TGTCTTAAAA GCCACCCAGA TATACCAGGA
TGCTGACATT CTCACCAAGG TCCGTCCGCC GAGTGATGAG GATGTACCAA AATTTGCCGG
GAAAACTTTA ATTAGTACAA TCCAGCCCGC AATTAACAGT GATCTATACC ATGCTTTGGT
GGCGCAAGGG ACGAACGTCT TTGCCTTGGA TTGTGTCCCT CGCATGCTCA GTCGAGGGCA
GTCGTACGAT ATTCTTTCCT CTCAGGCCAA CATTGCAGGC TATCGCGCCA TCGTGGAAGC
GGCGGAGCAA TTTCCACGTT TCTTTGCGGG TCAAATGACA GCCGCTGGTA AGGTACCTCC
CGCCAAAATC CTGGTGCTTG GGGCTGGCGT GGCCGGATTG GCGGCGGTGC AGACCGCCAA
AAATATGGGG GCAATTGTCC GGGCCTTTGA CGTACGTTCC ATCTGCAAAG AACAAGTCGA
ATCTATGGGC GCTACGTTTT TGGAAGTCGA TGTACAAGAA GACGGAAGTG GTACTGGTGG
ATACGCCAAG GAAATGAGTG ACGCCTATAA AGCGGCACAG GCCAAGCTCA TGCTAGAGCA
GGCCAAGGAC GTGGATATAA TTGTTACGAC GGCCTTGATT CCTGGCCGCA AAGCCCCTGT
GTTAGTAGAT GAAGGGATGT TGTCGGAGAT GAAGGCAGGA TCCGTCTGTG TGGATTTGGC
CGCTGCGAAC GGCGGAAACG TAGCTCTAAC TAAACCGGAC GAGATCGTCA CAACAGATAA
CGGGGTTAAA ATTGTCGGAT ACACCGACCT TCCGTCCCGT CTACCTGCGA CAGCCAGCAA
TCTTTTCGCA AACAATGTGG CCAAGTTCAT TTTAAGTATC GGTCCCCAGA CAACCAAGGA
AAAGAATCTC TTTCTAATCG ATTTAGATGA CGATGCAGTG CAAAATATGT TGATCGCTTA
CAAAGGAGAG GCCCGTTGGC CCGACAAGAT TAAGCCTTTT AGCCCTCCTC CACTACCAGC
CAAAGCCCAG GTAGACGTGC TATTGACGGA AGAAGATCCT ATCGTCTCGG CCAATAAAAA
GCAAAAAGTG TCGTTCGTAA AAAATACTGG CATTTCGAGT CTTGCTGCGA TTATTTTGGT
TGCCTTTGGT CTTACTACCG ATTCTCCTGA GAGTGTATCT CTATTGGCCA CCTTTGCGTT
GGCTGGCCTC GCAGGGTATC AAGTAGTCTG GGGCGTTGCA CCGGCTCTGC ACTCTCCACT
GATGGCCGTA ACCAACGCCA TTTCCGGGAT GACAGCAATT GGCGGCATGC TTCTTTTGGG
AAGTCATGCG ACGGACACCA AGGGTTTAAT TCCAGATAGC CCAGCACATT GGCTGGGCGC
TATTGCAACA GCGCTGTCGT TCGTAAATGT TGCCGGTGGA TTTTTGGTTT CCGGAAAGAG
TAAGTAAGCT TACAGGTAGT TCGCTCTGAT GTTTCAGTCC AACTAGAGAC GGCTAACTTC
CAACTGTCCT CTTTTTAATT GGTAACAGTG CTGGAATTGT TCCGCCGACA GAATGAGCCG
AAGGATTTCT TTGAACTGTA CGCAATCCCC ACGAGTGTTA TTCTTGCAGG ATTGGGTATA
GCTGGCTTCT CGGGAGTGGG AAATCTAGAC ACCATGACCG GCACTGTCGG CATTGCTTCG
GCCATCTGCT GCATTGCTGC GATTGCAGGG CTTGCGAATC AAGAAACTGC TAGGACTGGA
AATGTTCTAG GTATGGCAGG TGTAACGTTC GGCTTGGCGG CGGCAACCGG TGAAATGGCC
GTCGCCGAAG CTGCCCCTGC TGCTTTTCAG CAAGTCGGGC TATTGGGAGC TCTTGGAGGT
GGGGTGGGAT TGAAGCTTGC ATCAGGTGTC GGACCGACTG AGCTCCCCCA GACCGTTGCC
GCCTTCCATT CTCTTGTCGG TCTAGCAGCC ATGGCTGGAG CCGCGGGTGA ATTCTTTGCC
GGTGACGATC TGACCACAGG TACTCTCTCG GCGATTTATC TTGCCATCCT GATCGGAGGC
GTTACCTTTA CTGGTTCGAT AGTTGCCTTC AGTAAACTTG CCGGTATCAT GGGCTCGTCC
CCATTGCGCT TGCCTGGGCG CGACCAACTA AACCTTGCAA TGATTACGAC TTGTGTTCTA
GGTTTCGCTG CTTTTCTTGA CCCCTCTTTG GCTACAAATC TAGTCAGTAT TGATCATGGA
ACTGTGCAGC TCGTTAGCCT CGGAATAGTA GCTAGCATCG CATCAATTCT CGGCTATCAT
CTTACAGGTC AGGCAAACTT ATTCTATACG TTTTGCTTCG TTCTCAACAT GCTCTTACTT
GCTCCTCCAT TGATGTTTTA CCAGCAAGCA TTGGTGGTGC GGATATGCCG GTTGTCATTA
CAATCTTGAA TTCATACTCC GGTTGGGCAC TGTGTGCAGA GGGGTTCCTG CTTGGCAATC
CTCTTCTGGC ACAAGTCGGT GCCCTAATAG GATTTTCTGG AGCCATACGT GAGTTCTTGG
TTTCCTCAAA GCTAGGTGGC GTCGCCGATC TACTCTGAAT CTTACGAACC TCTTGTTTTT
GATTTGATTG GCAGTGACTT GGATCATGTG CGAGGTATGT CAACTAGACT TCTCTCTAAA
AGTTGATATT GTAGTATTTC GACTTACAAA GTGGTGTCTT TTGACAGGCC ATGGGAAGAA
ATGTTGTATC CGTTGTACTA GGTGGAGCAG GAACTGCTAC GAGCTCGGAA TCTACAGAAA
CAACTGCATT CGAAGGTGAA ATTACTACGA CCACAATCGA CAACGTTGCT GACGCTCTCA
AAGAGGCAAG GACCATTATG ATCACGCCTG GATACGGTCT TGCTGTAGCT CGTGCACAGT
TTTCGATTGC TGAAATCGCC AAAAAATTGA AGGAAGAAGG AAAGAATGTG CGTTTTGGTA
TTCACCCGGT CGCCGGCCGT ATGCCTGGCC AATTGAATGT TTTGCTTGCT GAAGCTGGTG
TTCCGTACGA TATGGTTTTT GAAATGGAAG ACATCAATGA AGAATTTGCG GAAACGGATG
TAACTCTTGT GATCGGCGCT TCGGATACCG TTAGTAGTGC CGCCGAGGAC GATCCCAAAT
GCAGCATCTA TGGCATGCCC GTCCTTCGAG TTTGGAAGAG TGGCCATGTT TTTGTCCTGA
AGCGGTCTAT TGGCAACACT GGGTATGCCG GTATGCAGAA TCCGATCCTA TTCAAGGACA
ATGTCGATGT TCTTCTCGGC GACGCCAAAG ACAGCTGCGA TGCTCTTCGC TCAGCATTGA
TCGACTGAAA ATCAAATTGT TGATCGAGTA ACCTTACATT AATGAATCGT CC
 
Protein sequence
MRITNFSIVG AVTATALVLS ACSISQAFSP PLRSVPRIRI NGRPSPSFRF AIIPDKEIQQ 
KTKKDTTQAF FDEEAPSPHD SGAGIPYERL TIGVLKESFP GECRVSQTPD SVRTLVKEGF
TVAVESGAGD KASFNDAAYL EAGAIVLKAT QIYQDADILT KVRPPSDEDV PKFAGKTLIS
TIQPAINSDL YHALVAQGTN VFALDCVPRM LSRGQSYDIL SSQANIAGYR AIVEAAEQFP
RFFAGQMTAA GKVPPAKILV LGAGVAGLAA VQTAKNMGAI VRAFDVRSIC KEQVESMGAT
FLEVDVQEDG SGTGGYAKEM SDAYKAAQAK LMLEQAKDVD IIVTTALIPG RKAPVLVDEG
MLSEMKAGSV CVDLAAANGG NVALTKPDEI VTTDNGVKIV GYTDLPSRLP ATASNLFANN
VAKFILSIGP QTTKEKNLFL IDLDDDAVQN MLIAYKGEAR WPDKIKPFSP PPLPAKAQVD
VLLTEEDPIV SANKKQKVSF VKNTGISSLA AIILVAFGLT TDSPESVSLL ATFALAGLAG
YQVVWGVAPA LHSPLMAVTN AISGMTAIGG MLLLGSHATD TKGLIPDSPA HWLGAIATAL
SFVNVAGGFL VSGKMLELFR RQNEPKDFFE LYAIPTSVIL AGLGIAGFSG VGNLDTMTGT
VGIASAICCI AAIAGLANQE TARTGNVLGM AGVTFGLAAA TGEMAVAEAA PAAFQQVGLL
GALGGGVGLK LASGVGPTEL PQTVAAFHSL VGLAAMAGAA GEFFAGDDLT TGTLSAIYLA
ILIGGVTFTG SIVAFSKLAG IMGSSPLRLP GRDQLNLAMI TTCVLGFAAF LDPSLATNLV
SIDHGTVQLV SLGIVASIAS ILGYHLTASI GGADMPVVIT ILNSYSGWAL CAEGFLLGNP
LLAQVGALIG FSGAILTWIM CEAMGRNVVS VVLGGAGTAT SSESTETTAF EGEITTTTID
NVADALKEAR TIMITPGYGL AVARAQFSIA EIAKKLKEEG KNVRFGIHPV AGRMPGQLNV
LLAEAGVPYD MVFEMEDINE EFAETDVTLV IGASDTVSSA AEDDPKCSIY GMPVLRVWKS
GHVFVLKRSI GNTGYAGMQN PILFKDNVDV LLGDAKDSCD ALRSALID