| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_18475 |
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| Symbol | EF-1 |
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| ID | 7203973 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011671 |
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| Strand | - |
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| Start bp | 223682 |
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| End bp | 225603 |
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| Gene Length | 1922 bp |
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| Protein Length | 439 aa |
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| Translation table | |
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| GC content | 54% |
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| IMG OID | |
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| Product | translation elongation factor, EF-1, alpha subunit |
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| Protein accession | XP_002186303 |
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| Protein GI | 219113439 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00280729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TCGTTTCGGT GCTCTCGCTT CGCGTACGGG CGGGCGGTCC CCCCCAAGCA GCGAGAGGAG
TCCGCAGCGT CATAGTTGCA TTCCGGGGCC CACTCGCGTT GTTCACTCTC TCGTCTAGTA
GAGAAACTTC CATCGGATCG TATCATAATA TTGTATCGTA TAATATCACG TAATCATGGG
AAAGGAAAAG GTTCACATTA GTTTGGTCGT CATTGGACAC GTCGATGCCG GTAAGTAGTG
AGAGAATAGA TACGGAAAGA GAAAGGGTCA TTCTCCCGTT GGACACATGC ACGCACACAC
AAGGCGATTG GAATTGGTTT TACTGTTGAG AGAATAAGTC TGCTATCACC CATGTCCACG
GATCGAGGTT CCTTTTGACT GCCTGCCTGC CGAATGCGCC GTTCAGCTTC GAGAGTACTA
TGCTCGGTAC CTACGGTCGT CCACGTCCAT GCGGCTTTCG TGATACGTCA CGGGAGACAC
TCACCGTTGC CTTATTTCCT TGCGATTGAT GTACAGGCAA ATCCACCACT ACTGGTCATT
TGATCTACAA GTGTGGAGGT ATCGATAAGC GTACCATTGA AAAGTTCGAA AAGGAAGCCG
CCGAACTCGG CAAGGGATCC TTCAAGTATG CCTGGGTCCT CGATAACCTC AAGGCCGAAC
GTGAACGTGG AATTACCATT GACATTGCGC TCTGGAAGTT CGAGTCGCCC AAATACTCCT
TTACCGTCAT TGACGCGCCC GGACACCGTG ATTTCATCAA GAACATGATC ACCGGAACTT
CGCAGGCCGA TGTGGCGGTC CTCGTCATTG ACTCGTCCCA GGGTGGATTC GAAGCCGGAA
TCTCCAAGGA CGGACAGACC CGCGAACACG CGCTTCTCGC CTACACGCTG GGAGTCAAGC
AGATGATTGT CGCCATGAAC AAGATGGACG ACAAGACCGT CAAGTACGCC GAAGACCGCT
ACACCGAAAT CAAGAACGAA GTCTCCGCCT ACCTCAAGAA GGTTGGTTAC AAGCCGATGA
AGATCCCCTT TGTCCCCATC TCCGGATGGG AGGGCGACAA CATGGTGGAG AAGTCCACCA
ACATGCCCTG GTACAAGGGA CCTTACCTGC TCGAAGCCCT CGACAGTGTC ACCCCGCCCA
AACGTCCCAC CGACAAGGCT CTTCGTCTCC CCCTTCAGGA TGTCTACAAG ATTGGTGGAA
TCGGAACAGT CCCGGTCGGC CGTGTCGAGA CCGGCGTTAT CAAGCCCGGT ATTCACGCCA
TGTTTGCCCC CTCGGGTATC ATTGCCGAAA TCAAGTCCGT CGAAATGCAC CACGAGTCCC
TCCCCGAAGC AGTCCCCGGT GATAATGTTG GTTTCAACGT CAAAAACGTG GCCGTCAAGG
ATCTGCGCCG TGGTTTCGTC GCTTCCGACT CCAAGGCTAG CCCCGCCTCG GGTGTTTCTT
CCTTCGAGGC CCAGGTCATT GTCATGAACC ACCCCGGTCA GATCTCCAAC GGATACTCTC
CCGTCTTGGA TTGCCACACC GCCCACGTTG CCTGCAAATT CGCCCTCATC AAGGAAAAGA
TGGATCGCCG CAGTGGAAAG GTTTTGGAAC AGAACCCCAA GTTCGTCAAG ACCGGAGACG
CCTGCATTGT CGATCTCGAG CCTACCAAGC CATTGTGCGT GGAGAGCTTT ACCGATTTCC
CCCCGCTCGG TCGTTTCGCC GTTCGTGATA TGCGTCAGAC CGTTGCCGTC GGCGTCATCA
AGGCCACCAC CAAGGAAGAA GGTGGTAAGA AGAAGAAATG AATGCGGGAG TGGACCGCGA
CGATCCGTCC GGAAAACAAT ACTAGGTGCT ATCACAGGGG CGCGTTTTGG AGAGACGTTC
TGCGGAAACA CGAATTTAGA ATACGTAACT AACATATAAA CTGGATAGCC CTCGCATCGG
AA
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| Protein sequence | MGKEKVHISL VVIGHVDAGK STTTGHLIYK CGGIDKRTIE KFEKEAAELG KGSFKYAWVL
DNLKAERERG ITIDIALWKF ESPKYSFTVI DAPGHRDFIK NMITGTSQAD VAVLVIDSSQ
GGFEAGISKD GQTREHALLA YTLGVKQMIV AMNKMDDKTV KYAEDRYTEI KNEVSAYLKK
VGYKPMKIPF VPISGWEGDN MVEKSTNMPW YKGPYLLEAL DSVTPPKRPT DKALRLPLQD
VYKIGGIGTV PVGRVETGVI KPGIHAMFAP SGIIAEIKSV EMHHESLPEA VPGDNVGFNV
KNVAVKDLRR GFVASDSKAS PASGVSSFEA QVIVMNHPGQ ISNGYSPVLD CHTAHVACKF
ALIKEKMDRR SGKVLEQNPK FVKTGDACIV DLEPTKPLCV ESFTDFPPLG RFAVRDMRQT
VAVGVIKATT KEEGGKKKK
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