Gene PHATRDRAFT_42749 details

Gene Information

• Locus tag: PHATRDRAFT_42749
• ID: 7196376
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: +
• Start bp: 958597
• End bp: 961687
• Gene Length: 3091 bp
• Protein Length: 1002 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002176696
• Protein GI: 219109886

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCCATTGTAT TTAGAAATGG ATTCTAGTCG TTCATCAAGC AACCGAGCTT CGAACTCATC 
TGCTTCGCTA AGTGCCAATA GTTTGCCTTC CCAAAAGGCG GACCAGACGG CGGCAGCAGC 
CGCGTCACTG AACTTGTTGT TGCGTGAAGA TCGTCTCCTG GTGATCCATG GTTTGACCGA 
ATCGGGTACT CAGCCTGACA AGGTGGCCTT TCCGTACGCG GCGGCACTTT TAGCAGACGG 
AGATGATAGC AATACTGTCA ATACGAAACA ACGTGCTGAT GGAGCGTTGC AGGATGTCGA 
GCGGAAACTA GCTTTGGTCG AGAGCCTTGC CGTGAAACTC AGTCGCACCA GCCCTGAGGC 
CGTTGCAGGC CATCTACTCA GATTGCATGG ATATCATCTT CCTAAAGAGG GCCTTAAAGA 
AGATAAGCCA TCCAGCACGA CGCTATCAGC GGTTAGAGAC AAAGCTGATC GCCTGGAACG 
GCAATCCGAA GTTCTGGAGA ATGTAGCTCG ACGAGTGGAG GGATCATTGT CACGGGGCTT 
GAAACGTATG GAGACTGCGT GTACTCGTCT TGAACGGGTT CTGTCACTGA GCAATACGCT 
AAAAATGATA CTGAGACTTC AGTTCGAAAA TAGCAAGTTG CAAAATTACG ATCTGGAGGA 
CTTACGTGAC CTGACTCGTG CCGCCGCCAG CGTCTCGGTA GTCGAGGATT TGCTGAAGCG 
CTCTGAACTA CAAGCCTCGA TTGAAGCCAT ACAAAAGATA CGCCCCGAGG TCGAACGCAC 
TGCAACTGAT GTACGCCAAT CAGCCGCTAT GCTGTTGCAG GATCAGTATC ATCAAAAAAA 
TGCTATTCAT CAGCTGGGCG GTACTCTTCA AGTGTATTAC CATTTAGGAG AATTACCGGG 
GGCCGTTTGG AAAGTAGTGG AAAACGCGCA CGGTAAAGCA GAATCTACAT CTCGAGATTT 
ATGGAACGCA TTGACCCTAA TGAATTTGAC AGAACAGGCC AAAAAGACAG CCAAAGATAG 
CCGGTCCGTG GAAAAGAAGC TCAAGCAAAT GCGGGCAGAA GCTGCATCTC AATGGGCGAA 
TGGTATCTAC GACGTGTCAA CACAGGTGCG AAATTTACAG CGAGTGCTTA TGCGCAAAAG 
CGATCCAATA CAGCGCCAAT TTTTTGTGGA CGTCGTGGCC GCCGCATCAA TTCCAGCCGC 
CTTCAGAGAT TCGTCTCTCG GAAAAGACTT TTCTTTGTTT GGTCTATTTT GGGGGCGCTT 
TTGCAAATCC CTGGGAATTA TTTTGGAAGA TATTTTGCAA CAGGACAATG GAAAACATCG 
CTCGGACGTC GCAAGCCTGT ATCCGTCTGT GCGTAGCGTT TCGAACGACA TGTTGAGCAC 
TTTGCAGGAT AATTTGAATG CAGGCAATTC AGCATTGGAG GACCTTGGAA CTGCTGCAAC 
CCCAGGTATT CTCGGAGGAT CTGCTCTCTT AGATGACACA TTTCTGGACT GGACAACGGG 
CCAGTTCGAT GTAGAGGAGA ATCCGCAATC TGCCACCACA CCTGATTCCT GGACCCATAC 
TACTCAACGC AGCGCATCGG CGAAACACCC TTCGCAACGT TTTTCGGCCT CAGGTGGGAC 
AGGCTCTGCT ACGATGTCTC AAATATATCA ATCGATGGAG TGGAATACTT TACAGGGAGA 
TAAGAAGGGA CGCCATGGGC TTTATCCATT ACAACAAGCA TTTATTGAAG CCTGTACGGA 
CAGGCTATGT TCTCCACTTC AATTCATGTT CCCAGAAAAC GTTGCTCTTG ACGACGACGG 
TGTCGCCATT GCTTCCGGGC TCAGTATGTT GCCCAGCAAG TACGATATTC AACGCTTTGA 
CGAAAACATC CGTCAGGAAA TTTCGTTGGC TGACCCGAAA GAAGGCGGCG GTGATCTAAG 
CAGTGTTACT ATGATAGCCA ACTGTGTCGT GTCTATGATT TCAGAGCTCT GCCTCCGAGC 
AAAGAATGCG TTGAGTGGTA TTGGAGAATC AGGATATCTG AATAGTGATT GGTCAATGAC 
GGAATCGCTG AAGCATGATC GAAAGGTGAC AGTGATTCTT TTCACTGTGG CAAATTACTT 
GCGTATCGCG CCTGATACAG TGTTTTTGGC ACCATACCGT CCGTCCATTT CATTGCAACA 
AGAAGAAGCA GCGAGCGTCT GCCAAGTCGC ACTGCAACCG GCTCTCAAGG AGATTGAGAA 
AATGGTTAAA AATTCTGTGA CCTCACCTTT AGGACGAGCA ATCAATAAGC GAATTGGTGA 
CACCATGGCA AAAATGCATC AAGGTGTCTA TCTTGGTAGC AATGTGGGTA TCGACGAAGA 
CTCCCCTGCC TTTGTGCAGA AACACTTGAA CGGCATTTAC GAAATCATTT CGAAAGAAAT 
TCTTTCGAAG TTGCCTCCAG AATATGGGTC GGCTGTGGCG ACATCTGTGG CAATGTTTTC 
GATCTATAAT TTTGTGTCAA ATTTTACTCT GCTTCGACCT TTGGGTGAAT CGGCTCGTCT 
GCATATTACG CAGGACTTGG CCGACCTTGA GCTTGCACTG GAACAGCTCA TGTTGAAGAG 
CGGAAATTCT GTTTCTTTGC ATTTTATTGG AAACGGCAAG CCGTACTTGG AACTCCGTGC 
CGTTCGCCAA ATGCTGTTTT GGACGGGGTT GGACAGCGCT GATAAACAAG CCGTGGATGT 
CGCCAAAAGC TTGTTGCGCG AACCGTGGAT GAAGGATGTA CGTCCGTCAA CTATCTTTCA 
CTATTTGTAC TCGTACGCGC CTTCGTTTTT GTCATCCCCA TACCATACGA GACGTATGAA 
GCCAGAAGCT TACGTTCGGT TGTTGGTGAA GCCAGATGGC TCCGTAGAGG AGACAGAAGA 
CGATGCTTGG ATGACAGTTA TGGCGAGCTG CGATGCTTAC CAACAAAGAG CAAGCTCTGG 
AGGCTCAAAT ATGGATGGAG ACATTCGAGT GGCTGAAAAG CTTTTGACTA TGGGACCGGA 
TGTTATGCGT CGGCGAGGAC ATTAGATGTA AATGTCTCAT CCCTCCTGGT GCTTATTGGT 
TTATTTAAAC TAGTTCGTCT TGTGTTCATT G 

 

Protein sequence

MDSSRSSSNR ASNSSASLSA NSLPSQKADQ TAAAAASLNL LLREDRLLVI HGLTESGTQP 
DKVAFPYAAA LLADGDDSNT VNTKQRADGA LQDVERKLAL VESLAVKLSR TSPEAVAGHL 
LRLHGYHLPK EGLKEDKPSS TTLSAVRDKA DRLERQSEVL ENVARRVEGS LSRGLKRMET 
ACTRLERVLS LSNTLKMILR LQFENSKLQN YDLEDLRDLT RAAASVSVVE DLLKRSELQA 
SIEAIQKIRP EVERTATDVR QSAAMLLQDQ YHQKNAIHQL GGTLQVYYHL GELPGAVWKV 
VENAHGKAES TSRDLWNALT LMNLTEQAKK TAKDSRSVEK KLKQMRAEAA SQWANGIYDV 
STQVRNLQRV LMRKSDPIQR QFFVDVVAAA SIPAAFRDSS LGKDFSLFGL FWGRFCKSLG 
IILEDILQQD NGKHRSDVAS LYPSVRSVSN DMLSTLQDNL NAGNSALEDL GTAATPGILG 
GSALLDDTFL DWTTGQFDVE ENPQSATTPD SWTHTTQRSA SAKHPSQRFS ASGGTGSATM 
SQIYQSMEWN TLQGDKKGRH GLYPLQQAFI EACTDRLCSP LQFMFPENVA LDDDGVAIAS 
GLSMLPSKYD IQRFDENIRQ EISLADPKEG GGDLSSVTMI ANCVVSMISE LCLRAKNALS 
GIGESGYLNS DWSMTESLKH DRKVTVILFT VANYLRIAPD TVFLAPYRPS ISLQQEEAAS 
VCQVALQPAL KEIEKMVKNS VTSPLGRAIN KRIGDTMAKM HQGVYLGSNV GIDEDSPAFV 
QKHLNGIYEI ISKEILSKLP PEYGSAVATS VAMFSIYNFV SNFTLLRPLG ESARLHITQD 
LADLELALEQ LMLKSGNSVS LHFIGNGKPY LELRAVRQML FWTGLDSADK QAVDVAKSLL 
REPWMKDVRP STIFHYLYSY APSFLSSPYH TRRMKPEAYV RLLVKPDGSV EETEDDAWMT 
VMASCDAYQQ RASSGGSNMD GDIRVAEKLL TMGPDVMRRR GH