| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_32294 |
|---|
| Symbol | Lhcr8 |
|---|
| ID | 7196903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | + |
|---|
| Start bp | 2139280 |
|---|
| End bp | 2140284 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | protein fucoxanthin chlorophyll a/c protein |
|---|
| Protein accession | XP_002176917 |
|---|
| Protein GI | 219110331 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00953155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTT GCCTTGCTAT TGCCTCCTTT GCAGCATCGG CCTCGGCCTT TGCTCCTTCT
CCGCAGAACA GCCAGAACAG CCGGACACAA ACCAGTCTGA ACAACGACCT CTGGGGACAG
CCTCCTTCGG ACGGTAAGGA GAAATCCAAA GCTCTTCCAT TCGCCAACCG ACCCAAGCTA
CTCGACGGAA GTATGCCTGG AGACGTCGGC TTTGACCCGT TTGGTTTCGC CGGCGCCGAT
AAAGCTAGCC TCATGTATAT GCGCGAGGCT GAAATCAAGC ATTGCCGTTT GGCCATGTTG
GCCGTCGCCG GATGGGTCTT TGCTGAGCTG TTTGATAAGG TACGTTGCAC TCTTGGCAGA
ATTGAGCAGC ATTATTTATT CATTCTAAAC GGCCGATTCT TGTTTCTATT CCTGCAGCCT
ATTGCCGATG CCGTCGGTCT TCCAACGGCC CTTACAAAGT CGGGAGCAAG TCCTTCAATT
CTAAATGGAG GCCTGGAGAA AATTGATATC GCTTATTGGC TGGCCGTTGT CACGCTTGCA
GGGATTGTCG AAATTGAGAA TTCCAAGGTT AAGGAAGACA AGGGAAAGGA CTACATTCTT
GGCGACTGCG GCTTTGATCC TATTGGTCTT TACCCGAAGG AAAAATCGGA GCAATTCGCT
ATGCAGACCA AAGAACTGAA GAATGGACGC CTTGCTATGA TGGCCAGTGA GTAGATCCAG
AGAAGTGCAT GCGGCGATAT TTCAATTTTC TAGATCTTAC ACATTGCCAT CTTTACTGTT
AGTCCTCGGA TTTGTGGCAC AGGAAGCACT CTACCGACAG CCTGTTGTTG CGACAACTCC
CTTTTTCTTC CAGCCTCTAT TCTAAACGAA AGTCAACCTA TTTGCTACAT AGATTTTATT
ATGCCAGTTG TTGAATTGAT CCTAGTATTT ATACGGCTTA ATATCTGCAT GGCTGAGGTT
GCTCTATAAT ACTGTTTAGA ACACAGCTAT CTTGGTTTGG CATAG
|
|---|
| Protein sequence | MKFCLAIASF AASASAFAPS PQNSQNSRTQ TSLNNDLWGQ PPSDGKEKSK ALPFANRPKL
LDGSMPGDVG FDPFGFAGAD KASLMYMREA EIKHCRLAML AVAGWVFAEL FDKPIADAVG
LPTALTKSGA SPSILNGGLE KIDIAYWLAV VTLAGIVEIE NSKVKEDKGK DYILGDCGFD
PIGLYPKEKS EQFAMQTKEL KNGRLAMMAK HSYLGLA
|
|---|
| |