| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3241 |
|---|
| Symbol | |
|---|
| ID | 7090656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 3555218 |
|---|
| End bp | 3556102 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643466549 |
|---|
| Product | squalene synthase HpnD |
|---|
| Protein accession | YP_002363510 |
|---|
| Protein GI | 217979363 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.154532 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTGC AGATCGAAAA GGATAAGGCG ATCGAAGCGG CCGTCGCCGC GGTCCGTGCG
CCGCAAGACT GCGCCGCCGC CGCGCAATCG CGCGGCAGCT CCTTCTATTT CGCCATGCGC
ATGCTGCCGC AGGCGCAGCG CGACGCAATG TTCGAGATCT ATTCCTTCTG CCGCGCCGTC
GACGACATCG CCGATGACGG TGGCCCGCTG GCGCCCCGCC GCGCGGCGCT GGCGAAATGG
CGGCGCGACA TCGACGCCCT CTATGCCGGA TCGCCGCCGC CGGAGATGGC GCCTGGCCTC
ATTGACGCCG TGGCGACGTT CCGGCTGGAG CGCGACGATT TTCATGCGGT GATCGACGGC
ATGGAGATGG ATCTTGCCGG CGACATCCGC GCGCCCGATC TCGCGACGCT CGATCTTTAC
TGCGACCGCG TCGCCAGCGC CGTGGGGCGG CTCAGCGTCA AAATTTTCGG CGTTCCGCAG
GCTGAAGGCC GCCCGCTCGC CTTTCACCTT GGCCGGGCGC TGCAATTGAC GAATATCCTG
CGCGATCTCG ACGAGGACGC CGCGATCGGC CGGCTCTATC TGCCGCGCGA GACGCTGGCC
TCTGCCGGCG TTTCTTTCGC AACGCCCGAG GCGGCGCTGG CCGATCCCGG GCTCGACGCC
GCCTGCGCGC CCGTGATCCT TCGCGCGAAG GATCATTTTC ATGAGGCGCG CGCAATCATG
GCGCGCTGTC CGCGCCAATC CATCCGCGCG CCAATGATCA TGGCCGACGC CTATGAGCCG
ATCCTTGCGG GGCTCGCCCA TCGTGGCTTC GCCCCGCCGC GCAAGCGCAT TCGGACGTCG
AAATGGCGCG TCCTCGTCGC CATCCTGCGT CACGGCCTGA TCTGA
|
|---|
| Protein sequence | MSVQIEKDKA IEAAVAAVRA PQDCAAAAQS RGSSFYFAMR MLPQAQRDAM FEIYSFCRAV
DDIADDGGPL APRRAALAKW RRDIDALYAG SPPPEMAPGL IDAVATFRLE RDDFHAVIDG
MEMDLAGDIR APDLATLDLY CDRVASAVGR LSVKIFGVPQ AEGRPLAFHL GRALQLTNIL
RDLDEDAAIG RLYLPRETLA SAGVSFATPE AALADPGLDA ACAPVILRAK DHFHEARAIM
ARCPRQSIRA PMIMADAYEP ILAGLAHRGF APPRKRIRTS KWRVLVAILR HGLI
|
|---|
| |