| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_2874 |
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| Symbol | |
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| ID | 7092790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 3160926 |
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| End bp | 3162956 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 643466184 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_002363153 |
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| Protein GI | 217979006 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.0536834 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTCCCC TTGTCGAAAA ACCGCGGCCC GCGAAGGCGC AGGCCGACGC GGCAGCCCCG
GACGCCGCGC CGGAGCGGAT CGCCAAAGTC ATCGCCCGCG CCGGCGCCTG TTCGCGCCGC
GACGCGGAGA CCTTGATCAG CGAAGGCCGG GTCGCCCTGA ACGGCGCGAT TCTGATTTCC
CCGGCGATCA ATGTCGGTCC GGACGATGTT ATTCTGATCG ACGGAGCGCC GCTCGCCGAA
CGCGCCCGCA CCCGCCTGTT CCTGTTCCAC AAGCCGCGCG GCCTCGTCAC CACCGAGCAC
GATCCGGAAG GGCGCCCGAC CGTGTTCGAT TATGTGCGGG AGCATTCGCC CGAAGCGCCT
CGCCTCGTCA GCATTGGCCG GCTCGACATC AACACCGAAG GGCTGCTGCT GCTCACCAAT
GACGGCGGCC TCGCGCGCGT GCTCGAACTG CCCGCGACCG GCTGGGCGCG GCGATACCGC
GTGCGCGCCA AGGGGAGCAT CGATCAGCCG ACGCTCGACC GGCTGCGCCA GGGCGTTACG
GTCGAGGGGG TCGATTACGC GCAGATCGAG GCGACGCTCG ACCGCATCCA GGGCGCCAAT
TGCTGGCTCA CCATGAGCCT TCGCGAAGGC AAGAATCGCG AAATCAAGCG CGTGCTCGAA
CATCTCGGCC TTGAGGTCAA CCGGCTGATC CGGCTCTCTT ATGGTCCCTT CCAGCTCGCC
GACCTTGAAG AGGGCAAAGT CGAAGAGGTG CGCACCCGCG TGCTGCGCGA CCAGCTCGGC
GCCGCGCTCG CTGAGGCGGC CGCGGTGGAT TTTGTCGGGC CGGCCGGAGA CGCGCTGACG
CCGCCGCCCG AAGAGCCGGC GCCGCGCCCG CCGCGCCAGA AATCCCTGCG CAATCAAAAG
GCCTTTCGCG ACGAGGAAAG GCCGCGCAGA GACAGCGGCC CGTTTCGCAA GGCCGAAGGC
GGCGGCCGCC CGGCAGGCGC CGGTCTGCTT GCGCGCCGGC GCGGCCCCGA CCCCGCCGCC
TTCGACCCGG CTCAGCCGCG GAAAAACAAG CCCGCGCCCG GCCCGCGCAA ACATATTTCG
TCGCTCCGCG CGGAAGCGTC CGAACCCGGC GCCGGCCGCA CGCGAATTGA ACGCAGCGAA
ACGGCCGATC GCAGCGGCCG GGCGGTGGCC GTCGAGCGCC GCGTCGCCGC AAAGGTGAAT
TTTCGCGAGG AGGCCGCGCC ACGGCCAAAA ACGGCGGGCC CGCGTCCAGC CAGAGAAAGC
GCCGAGCGCG ATCGCCGCGC AGGGCGCAGC CAAGCGCGGG AGGAGGCGCC TCCGCGCCTG
CGTGACCGCG CTGCCGCCGA TGGCGGCGGG AGACGGCGCG GCCCCGATCG CGCCGGCGGA
GCCGAAGACG ACCGCAAGAA GCGCGAGAGC GCCGGCGCGG GAACGGAGCC TCGCGGCAAA
AGGGCGACGC CCGCGCGCGC CGACCGGCCG CCCGGCGGCA AAGCCGCTCC CGCAAAAGCT
TTTGGGGTAG GACGGCGCGA CGACGATCGC CCGCGCGACC GTTCTCCGCG CGCAGACAGC
GGCGAAGGAG CGCGCGCGTC GGCGCCGCGT TCGACGAAGG ATCGTTCGCA TCCGAGAGGC
GCGCCCCACC GCGCAGGCGG GCGATCTGGC GCGGCGGCGA ACGCAGACGA GCGCGAAAGC
TCCGTCTCCG CGCGCGGCCC GAAGCGCTTT GAGGCGCGGG CCGCAAAGCG GCGCGACGAA
AAATCAGCCG CGCCCCGCAA CAAGGCGGCG CGAAGCGAGA GGGCCGGCGA AACGGCGCGA
GATTTCCGCA AGGGAGCCGA ACGCGCGGCC GGCGCGCGCG GCGGCAAATC GGCCGAGCGC
AGCCCGCGCG CGGGCGCAAA ACCGTCCGGG CCTCCTCGCG GAAAAGGTGG CCCCGGCAAG
GGGGGCCCCG GCAGGAACGC ACCTGGCAGA GGCGGGCCTG GCGGCAAAGG CGGTCCCAGT
AAAGGCGCCC CTGGCAATTC GCGCCCGCGC GGCCCGAGCA AAAGGCCGTA A
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| Protein sequence | MAPLVEKPRP AKAQADAAAP DAAPERIAKV IARAGACSRR DAETLISEGR VALNGAILIS
PAINVGPDDV ILIDGAPLAE RARTRLFLFH KPRGLVTTEH DPEGRPTVFD YVREHSPEAP
RLVSIGRLDI NTEGLLLLTN DGGLARVLEL PATGWARRYR VRAKGSIDQP TLDRLRQGVT
VEGVDYAQIE ATLDRIQGAN CWLTMSLREG KNREIKRVLE HLGLEVNRLI RLSYGPFQLA
DLEEGKVEEV RTRVLRDQLG AALAEAAAVD FVGPAGDALT PPPEEPAPRP PRQKSLRNQK
AFRDEERPRR DSGPFRKAEG GGRPAGAGLL ARRRGPDPAA FDPAQPRKNK PAPGPRKHIS
SLRAEASEPG AGRTRIERSE TADRSGRAVA VERRVAAKVN FREEAAPRPK TAGPRPARES
AERDRRAGRS QAREEAPPRL RDRAAADGGG RRRGPDRAGG AEDDRKKRES AGAGTEPRGK
RATPARADRP PGGKAAPAKA FGVGRRDDDR PRDRSPRADS GEGARASAPR STKDRSHPRG
APHRAGGRSG AAANADERES SVSARGPKRF EARAAKRRDE KSAAPRNKAA RSERAGETAR
DFRKGAERAA GARGGKSAER SPRAGAKPSG PPRGKGGPGK GGPGRNAPGR GGPGGKGGPS
KGAPGNSRPR GPSKRP
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