| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_2352 |
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| Symbol | |
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| ID | 7090336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 2556793 |
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| End bp | 2560338 |
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| Gene Length | 3546 bp |
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| Protein Length | 1181 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643465674 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_002362644 |
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| Protein GI | 217978497 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGG AAATCATCCG CATCATCGCC TATGGGGTCG GGCTCTCCTC GATCGCCGCG
GTGGTCTATC TCGCCGGTCC GATGATCGAG ATCGGCGGCG TTCGCCCGCT CGAAAATTCG
ATCGTTCGCG ACATCATTAT CGTCGTGCTG GTCGCCGCCG CCGCCGGGCT GGCCGGCTTT
ACCTTTTGGC GGCGCAAGAA AAACGCTGCC GAGATCGAAA AGGGCATCGC CGAAGGCGGC
GCCCCGGATA GCGACGCCGA GGTTTTGGGC GAGCGCATGA AGGACGCACT GGCGACGCTG
AAAAACGCCA GCAAAGGCGC GACCAAGGGC GCTTATCTTT ATGAACTGCC CTGGTATCTC
CTGATCGGAC CGCCCGGCGC CGGCAAGACC ACGGCGCTCG CCAATTCCGG CCTCAAATTC
CCGCTGAGCC GGGGCGCGAC CCCGGCGGCG GTCGCGGGCG TCGGCGGCAC GCGCTATTGC
GACTGGTGGT TCACCGAAGA CGCCGTGATG ATCGACACGG CCGGGCGCTA CACGACGCAG
GATTCCGACG CGCGGGCCGA TCAGAAAAGC TGGCTCGCCT TTCTCGATCT TTTGAAGAAG
AATCGGCCGC GCCAGCCGAT CAATGGCGTC ATCGTCGCGA TCGCCCTCTC CGACATCATG
ACCGAGACGC AGGCGCAGAT CGAAGCGCAT GCGCAGGCGA TTCGCTCGCG GCTGATCGAG
GTCAACAAGC AGCTGAAGGT CGATTTTCCG GTCTATGTGC TGTTCACCAA GGCCGATCTC
ATCTCGGGCT TTCGCGAGTT TTTCGGCTCG CTCAACGAGA ACGCCCGCGC GCAGGTATGG
GGCGCGACCT TCCAGACGGC GGACAAGAAG CTCAATCTCG TCGGCGAGGT TCCGGCCGAA
TATGATTCGC TGATCGCGCG CCTCAACGAA TGGACCACCG ACCGGCTGCA GGAAGAGCCG
GTGCCCTCGA CGCGCGCGTC GCTGTTCGGC TTTCCGGCGC AGGTCGCGGC GCTGAAGAAG
CCGGTGTTCA ATTTCCTCAA TCTGATCTTC GAGCCAACGC GCTACCACGC CAATGCGACG
CTGCGCGGCT TCTATTTCAC CTCCGGCACG CAGGAGGGCA CGCCGATCGA TCAACTGATC
GGCGCGCTCT CGCGCAGTTT TGGCGCGCGC GAAGTCGCCG CCAACGCCTA TTCGGGGCGA
GGCCAGAGCT ATTTTCTGAA GAATCTGGTC GGCAAACTGA TCATCGGCGA GGCCGCCTGG
GTCTCGACCG ACCGCGCCGC GGTGTTTCGC GCGAGGCTGA TCAAGGGCGT CGCGCTCGGC
CTGCTGGCGC TCGTCTGCGC GGGCCTCTCG CTCGCCTGGT TCGGCAGCTA TCAGCGCAAC
AGCGATCTGA TCGTGCGCAC GCAGGCTGGC GCGGCCGATT TCCGCACGGT CGCCGGCCCG
CTCGCGACGG AGCCCGAAAT TTCCGACCGC GATCTCGCCA AGATTCTGCC CCCGCTCAAC
AAATTGCGGT TCTTGCCGGC CGGATTTGAA ACCAAGGGCG AGACGCCGCC GCTCGCGGCG
ACGTTCGGCC TCAGCCAGTT CGACCGGCTG CAATCGGCGT CAACGGGCGC CTATGACATG
GCGCTCGAGC GGCTGCTGCG TCCGCGCCTG ATCTACCGTC TCGAAGAGCA GATGGAGGCG
AACCGCGGCG ACCCGAGTTT TCTCTATGAG GCGCTGAAGG TCTATCTGAT GCTCGGCGGC
TTGCATGCGG TCGATCGTGA TCTCGTCATG AATTATCTGC GCCGCGACTG GACCGAAAAT
CTTTATCCCG GCTCCGCCAA TGCCGACGGG CGCAGGCTGC TCGAGGCCCA TGTCGCGGCG
ATGCTCGACA TGAAGGGCGA CATCATCGTC AGCCTCAACG GGCCGCTGGT GTCGGAAGCG
CAAAATCTTC TCGCGCGGCT CAGCGTCTCG CAGCAGGCCT ATGAGCTGCT CCGCTCGCAG
GCGGCAAGCT CGGAGATTTC CGATTGGAAC GCCGCGCGGC AGGGCGGCCC CGATTCTGCG
CTGGTGTTCG AGGCGACGCA GGGCGCTGCG CTTGATTCCA TAAAGGTGCC GGCCTTCTAC
ACCTATGCCG GCTTCCGCCG TCTGTTCATC GACCGGCTGT CCGGCATCGG CGAAAAACTC
AAAAGCGATC GCTGGGTGCT CGGCGCCGCG GGCGAGCAGG CGGCGGTCGA GGATCAGTAC
AAAAGCCTCA GCGACGATCT GCTGGCGATC TATGGCAAGG ATTTTATCGC GGCCTGGCAA
AGCGCGCTCG GCCGGCTGAA GCTGAAGCGC CTCCTCGCCG ACAAGCCGAA ATATGTGACG
CTGGCGGCGG CCTCCGCGCC GACTTCGCCA ATCAAGCAAC TGATCGTCTC CGTGCGCGAC
GAGACCGCGC TGACGCGCGA GCGGCCGGGC TTCGCCAAGA AGGAAGGCGT CGATCCGAAC
GCCGCTTTGT TTCAGAACCG CGCCGTCCCG GGCGCCGATA TCGAGCAGGC CTTCAAAGCC
TATCACGTGC TGGTCGAGGG GGAGGCCGGG CGGGCGCCGG TCGATCTCAT CATCTCGAAC
CTCGCCGAAA TCTACCAAAG CCTGCTGCTG ATGGGCAATC CGGCGCAGGC TCCGCTCGCA
ACCTCGCAGC TGCAGACGCA GGTCGCGGCG TTGCGCGCCA ACGCCAACCG GCTGCCGCAG
CCCTTCGCCG GCATGCTGCA AACGGCGGGG ACCGATATCG ACGGCGATCT GACCAACAGC
TTCCGCTCGC AGCTGAACCG CGCGCTGCGC GATACGGTGA CGGGGGTCTG CCAGCAGGTG
GTGTCGAACC GCTACCCCTT CGCCCGCACC GACCGCGAGG TTTCTCTCGT CGACTTCGGC
CGCCTGTTCG GCCCGCAGGG GATCATCGAC AAATTCTTCT CAACTCAGAT CCAGCAATAT
GTCGACATGT CGAAGCCGGT CTGGACATTC CGGCAGGACA ATAATGTCGC GCGGGCGCTC
GCCTCGTCCG GCGCGACGCT GAAGGAGTTC CAGCGCGCGG CGCAGATCCG CGACGTGTTC
TTTGCGACCG GCGGGCTGAT GCCCTCGATG ACGCTGACGA TTACGCCGCC GCCGGCGCCG
CTTCCCGCTC TGCCTGCTCC GCCGCCGCCC GCCGCGGGCG CGGCTCAGGC GGCGCCGGCC
GCCACTCCGG CGCCCGCCGC GCCGACGGTG AGCATCAAGA TGGACATGAA CGGAACGCCG
ATCATCAGCC CGGCGGGCGC CTCGGCGCCG GTCGTCGCGC AATGGCCGGG CGCATCGACC
AACCGTAGCG CGATTACCGT GACCTCGGAT GCGCCGGGCG CGCAGCCCTC GACCATCGAG
CGGCGCGGTC CCTGGTCGCT GTTCCGGCTG ATCGAGGCGG GCGCCCCGGT GCCGCACGGC
GATTCGATCG TCGTCAGCTA CATCGTCGGC GGCCGGGAGC TACAATATAC GTTCAGCGCG
GGCTCGACGC AGAATCCGTT CACGCTGCCG GCGCTGCGCG AGTTTCACTG CCCGAGCGAC
CTTTAG
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| Protein sequence | MNKEIIRIIA YGVGLSSIAA VVYLAGPMIE IGGVRPLENS IVRDIIIVVL VAAAAGLAGF
TFWRRKKNAA EIEKGIAEGG APDSDAEVLG ERMKDALATL KNASKGATKG AYLYELPWYL
LIGPPGAGKT TALANSGLKF PLSRGATPAA VAGVGGTRYC DWWFTEDAVM IDTAGRYTTQ
DSDARADQKS WLAFLDLLKK NRPRQPINGV IVAIALSDIM TETQAQIEAH AQAIRSRLIE
VNKQLKVDFP VYVLFTKADL ISGFREFFGS LNENARAQVW GATFQTADKK LNLVGEVPAE
YDSLIARLNE WTTDRLQEEP VPSTRASLFG FPAQVAALKK PVFNFLNLIF EPTRYHANAT
LRGFYFTSGT QEGTPIDQLI GALSRSFGAR EVAANAYSGR GQSYFLKNLV GKLIIGEAAW
VSTDRAAVFR ARLIKGVALG LLALVCAGLS LAWFGSYQRN SDLIVRTQAG AADFRTVAGP
LATEPEISDR DLAKILPPLN KLRFLPAGFE TKGETPPLAA TFGLSQFDRL QSASTGAYDM
ALERLLRPRL IYRLEEQMEA NRGDPSFLYE ALKVYLMLGG LHAVDRDLVM NYLRRDWTEN
LYPGSANADG RRLLEAHVAA MLDMKGDIIV SLNGPLVSEA QNLLARLSVS QQAYELLRSQ
AASSEISDWN AARQGGPDSA LVFEATQGAA LDSIKVPAFY TYAGFRRLFI DRLSGIGEKL
KSDRWVLGAA GEQAAVEDQY KSLSDDLLAI YGKDFIAAWQ SALGRLKLKR LLADKPKYVT
LAAASAPTSP IKQLIVSVRD ETALTRERPG FAKKEGVDPN AALFQNRAVP GADIEQAFKA
YHVLVEGEAG RAPVDLIISN LAEIYQSLLL MGNPAQAPLA TSQLQTQVAA LRANANRLPQ
PFAGMLQTAG TDIDGDLTNS FRSQLNRALR DTVTGVCQQV VSNRYPFART DREVSLVDFG
RLFGPQGIID KFFSTQIQQY VDMSKPVWTF RQDNNVARAL ASSGATLKEF QRAAQIRDVF
FATGGLMPSM TLTITPPPAP LPALPAPPPP AAGAAQAAPA ATPAPAAPTV SIKMDMNGTP
IISPAGASAP VVAQWPGAST NRSAITVTSD APGAQPSTIE RRGPWSLFRL IEAGAPVPHG
DSIVVSYIVG GRELQYTFSA GSTQNPFTLP ALREFHCPSD L
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