| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_2211 |
|---|
| Symbol | |
|---|
| ID | 7093433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | - |
|---|
| Start bp | 2388639 |
|---|
| End bp | 2392169 |
|---|
| Gene Length | 3531 bp |
|---|
| Protein Length | 1176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643465532 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_002362507 |
|---|
| Protein GI | 217978360 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGACC TCAAACGCGC GATCGCCGAG CTGTCAAAAG GCGGCTCGCT GACCCTCTCC
TCGCTCGCCG ACGGCTTTGA CGCCTTTTGC GTCGCCGATC TGACCCGCGC TCTGGCGCGC
GAGTCCGAGG AGCGCGCCTT GGCGCTGGTG CATGTCGCGC GCGACAGCCA GCGGGCGGCC
TCCTTTGCGG AAGCCTTCGC CTTCGCCGCC CCCGACATCG AGCTTCTCGA TTTTCCCGGC
TGGGATTGCC AGCCCTATGA CCGGGTCTCG CCCAACGCCT CGGTGACGGC GCGGCGGATG
ATCGTTCTGT CGCGGCTGGC CCGCTCGCGG TCCAGCGCCG ACCGCCCGCG GATTCTCTCG
ACGACGATCA AGGCGCTGAT CCAGCGCGTG CCGCCGGTGC GGCAGATGGC GGCCGACACC
TTTTCGGCTG CGCCCGGCAA TGTCGTCGAT CTCAACGCGT TGACCCTGTG GCTCGAAACC
AACGGCTTCG TGCGCGCCTC GGTCGTGCGC GAGGCCGGCG AATATGCCGT GCGCGGCGGC
ATCCTCGATC TTTACGCGCC GGGCATGGCG CAGCCGGTTC GGCTCGATTT CTTCGGCGAC
GCGCTGGAAT CGATCCGGGC GTTCGATCCC GAATCGCAGC GCACGCTGTT TCCGCTGCGC
GGCCTCGACC TTGTGCCGAT GAGCGAGGTG CAGCTGACGA GCGACGCGAT GCGGCGGTTC
CGGCAGGCCT ATGTCGCCAC GTTCGGCGCG CAAACGCGCG GGGATTCGCT CTATGAGGCG
ATCAGCGAAG GGCGCCGCCC TGCCGGCCAC GAACATTGGC TGCCGCTGTT TTACGACGGC
CTCGACACGG TGCTGGATTA CGCCGGCCGC GCGCCCTTGG TGCTTGATTC GCTGAGCGAT
GAGGCCGCGC GCGAGCGTAT CGCGCTGATC GAGGATTATT ACGACGCGCG CAAAACCGCC
TATGACGCCG ATCCGGCGCA GGCCGGCTAT AAGCCGCTCA AACCCGACAC GCTCTATCTG
ACGCGGGAGG AATGGGCGCA GCGTCTTGGC CGCGCCCGCG TGATCCGCAC GACGCCCTTC
GCCGAGCCAG AGGGAAGCCG CGGCCTCGTC ATAGACTGCG GCTCGAAGCC GGGCCGGAGT
TTTGCCCCCG AGCGCGCCGA TGAAGCCGCG AATGTGTTTC AGGCGGCGGT CGATCACGTC
AAGGCGCTGC AATCCGGCGG CGCAAGGGTG ATCGTCGCCG CCTGGTCCGA CGGCTCGCGC
GAGCGGCTCG CCCATGTCCT CGCCGACCAC GGGCTGACGG GCGCCGCCAA TGTCTCCTCG
CTCGTTCAGG CGCGCGAGCT GCCGCAAACC GCCGCCGCCT TGGCCGTGAT CGGCCTTGAA
GCCGGTTTCG AGGCCAAGGC CGACGGCGAA AGCCTCGCCA TTGTCGGCGA GCAGGATGTT
CTCGGCGACC GCCTCGTGCG CGCCCGCAAG AAGAGCCGCA AGGCGAAGGA TTTTCTGAGC
GAGGTCGGCG CGCTCGCCGC CGGCGACATT GTCGTCCATG TCGATCACGG CATCGGCCGC
TTCGTCGGCC TGCAGTCGAT CGACGCCGGC GGCGCGCCGC ATGACTGCCT GGAACTGCAT
TACGCCGAAG GGGCAAAGCT GTTTTTGCCG GTCGAAAACC TCGAGCTCCT CTCGCGCTAT
GGCTCGGAGG ACACCGAGGT TCAGCTCGAT CGTCTTGGCG GCGGCGGCTG GCAGAAACGC
AAGGCGAAGA TGCGCAAGCG CATCCTCGAA ATGGCCGCGG GCCTCATCAA AATCGCCGCC
GCGCGCTTTA CGAAGGAGGC GGCGAAGCTC GCGCCGCCGG AAAATCTCTA CGACGAATTC
TGCGCCGGCT TTCCCTATGA CGAGACGGAA GACCAGCTGA CGACGATCGA CGCCGTCCTC
GAAGATATGG CCTCGGGCCG GCCGATGGAC CGGCTGGTTT GCGGCGATGT CGGCTTCGGA
AAGACGGAAG TCGCGCTGCG CGCGGCCTTC GCCGCTGCGA TCGAGGGCAA GCAGGTCGCC
GTGATCGTGC CGACGACGCT GCTGGCGCGC CAGCATTACA AGAACTTTTC GAGCCGCTTC
GCCCATCTAC CGGTCAAGGT GGCGCAGATG TCGCGCATGG TCAGCGCCGC CGATCTCAAG
GCCGCCAAGG CGGGGGCGGC GTCGGGCGAT ATCGACATCG TCGTCGGCAC CCATGCCGCG
CTCGGCAAGG GCGTGACCTA CAAGGATCTT GGCCTCGTGA TCATCGACGA GGAGCAGCAT
TTCGGCGTCA AGCACAAGGA GCGGCTGAAG GAGCTGCGCG CCGAGGTGCA TGTGCTGACG
CTATCGGCGA CGCCGATTCC GCGCACGTTG CAGCTCGCTC TGACGGGGGT GCGCGAACTT
TCGATCATTG CGACGCCGCC AGTGGACCGG CTTGCCGTGC GCACCTTCAT CACGCCCTTC
GATACGCTGC TCGTGCGCGA AGCTTTGCTG CGCGAGCGCT ATCGCGGCGG CCAGAGCTTT
TATGTCTGCC CGCGCATCGA CGACATCCAG GATGCGGCGG CCTTCCTGCG CCAGCATGTG
CCGGAAGTGA AATTCGTCAT CGCTCACGGC CAGATGCCGG CGACCGAGCT CGAAGACAAG
ATGTCGGCCT TTTACGACGG CCAGTTCGAC GTGCTGCTGT CGACCGCAAT CGTCGAATCC
GGTCTCGACA TTCCGACCGC CAATACGCTG ATCGTGCATC GCGCCGATAT GTTCGGCCTC
GCCCAGCTCT ATCAGCTGCG CGGCCGCGTC GGGCGCTCCA AGGTGCGCGC CTATGCGCTG
TTCACCGTTC CGGCCGAGCG GGCGATGACG GCGCAGGCGG AAAAACGGCT GAAAGTGCTG
CAATCGCTCG ATACGCTCGG CGCCGGCTTC GAGCTTGCGA GCCATGATCT CGACATTCGC
GGCGCCGGCA ATCTGCTTGG CGACGATCAG TCCGGCCATA TCAGGGAAGT TGGCTACGAG
CTTTACCAGC AGATGCTGCA GGAAGCGGTG GAGGCGCTGA AGGCGGGCGT CGAGGAGCCT
GCTGAAGAGG CCTGGTCGCC GGCGATCACG CTTGGCGCGC CGGTGACCAT CCCCGAAGAT
TACGTCGCCG ATCTGCAATT GCGGCTGCAA CTCTACCGGC GCCTCGCCGG CCTGGAGACC
GACGAGGAAA TCGAAAGTTT CGCCGCCGAG ATGATCGACC GCTTCGGGCC GTTGCCGCCC
GAAGTCGCGC AATTGATGAA GCTCGTCTCG ATCAAGGCCT TGTGCCGCAA GGCTCATGTC
GAAAAGGTGG AGGCGGGCCC GAAGGGCGTC ATCGTCTCCT TCCGCGACAA TTCCTTCGCC
GATCCGCAGG CGCTCGTGCG CTATGTGTCC GAGCAGGGCC CTTACGCCAA GGTCCGACAT
GACATGAAGA TCGTCTTTTC GCGCGAGTTC GAGCGGCTCG ACGACAGGCT CGAAGGAACG
CGCAAAATCA TGCGGGCGCT CGCCGCCATC GCGACGAAAA AGGCGGCGTA A
|
|---|
| Protein sequence | MADLKRAIAE LSKGGSLTLS SLADGFDAFC VADLTRALAR ESEERALALV HVARDSQRAA
SFAEAFAFAA PDIELLDFPG WDCQPYDRVS PNASVTARRM IVLSRLARSR SSADRPRILS
TTIKALIQRV PPVRQMAADT FSAAPGNVVD LNALTLWLET NGFVRASVVR EAGEYAVRGG
ILDLYAPGMA QPVRLDFFGD ALESIRAFDP ESQRTLFPLR GLDLVPMSEV QLTSDAMRRF
RQAYVATFGA QTRGDSLYEA ISEGRRPAGH EHWLPLFYDG LDTVLDYAGR APLVLDSLSD
EAARERIALI EDYYDARKTA YDADPAQAGY KPLKPDTLYL TREEWAQRLG RARVIRTTPF
AEPEGSRGLV IDCGSKPGRS FAPERADEAA NVFQAAVDHV KALQSGGARV IVAAWSDGSR
ERLAHVLADH GLTGAANVSS LVQARELPQT AAALAVIGLE AGFEAKADGE SLAIVGEQDV
LGDRLVRARK KSRKAKDFLS EVGALAAGDI VVHVDHGIGR FVGLQSIDAG GAPHDCLELH
YAEGAKLFLP VENLELLSRY GSEDTEVQLD RLGGGGWQKR KAKMRKRILE MAAGLIKIAA
ARFTKEAAKL APPENLYDEF CAGFPYDETE DQLTTIDAVL EDMASGRPMD RLVCGDVGFG
KTEVALRAAF AAAIEGKQVA VIVPTTLLAR QHYKNFSSRF AHLPVKVAQM SRMVSAADLK
AAKAGAASGD IDIVVGTHAA LGKGVTYKDL GLVIIDEEQH FGVKHKERLK ELRAEVHVLT
LSATPIPRTL QLALTGVREL SIIATPPVDR LAVRTFITPF DTLLVREALL RERYRGGQSF
YVCPRIDDIQ DAAAFLRQHV PEVKFVIAHG QMPATELEDK MSAFYDGQFD VLLSTAIVES
GLDIPTANTL IVHRADMFGL AQLYQLRGRV GRSKVRAYAL FTVPAERAMT AQAEKRLKVL
QSLDTLGAGF ELASHDLDIR GAGNLLGDDQ SGHIREVGYE LYQQMLQEAV EALKAGVEEP
AEEAWSPAIT LGAPVTIPED YVADLQLRLQ LYRRLAGLET DEEIESFAAE MIDRFGPLPP
EVAQLMKLVS IKALCRKAHV EKVEAGPKGV IVSFRDNSFA DPQALVRYVS EQGPYAKVRH
DMKIVFSREF ERLDDRLEGT RKIMRALAAI ATKKAA
|
|---|
| |