| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_1371 |
|---|
| Symbol | |
|---|
| ID | 7091709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 1481318 |
|---|
| End bp | 1482688 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643464709 |
|---|
| Product | transcriptional regulator, CarD family |
|---|
| Protein accession | YP_002361698 |
|---|
| Protein GI | 217977551 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1329] Transcriptional regulators, similar to M. xanthus CarD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.401785 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTCCG TCAAGAAGAC CCTACAGCCG TCAAAAATCA AATCAGCGGC GCCTGCCAAT
GCATCGAAAC AATTAAAGGC GTCTTCGTCC ACGATTAAGG CGAAGACCGG CCAGGATGCG
GGGGAGCCCA AGATCAAGGC GCGGAGCGCC GCGGCGCCGT CAAAGCGCGC GGCGGCGGCG
GATTCGTCTC GCGCAAAGAG CGCTCCAAAG AGCGCCGCCA AGATCATCGC CGACGCCGCG
GCTGTAACCA AAGATAGCGC GGCGGGCAAA GAAAGAAGAA CTGCGGACCA AAGAAAAGCG
GAGCGGGAGA CGGTCAAGAG AACCGCGCCC GAGGCGAAAG CCGACGCTTC AGTGAAACCC
TCTTCTTCGG ACAAGAGCTT GTCGACTAAA AACACTTCGA TCAAAAACAG TTCAGCTAAA
AACGCTTCGG CCAAGAAAAC GTCAGCCGGA AAGAATTCGG CGAATCCGGC CCCCGAAGAC
GCCGATAAGA AATCGGAGCC TGCGCCGAGC GTCTCGGCGG TTTCCGTCGC CCGCTTTCAG
GCCGCCAGAA CGGCTGCGGC GGCCGCGCAG CAAAAAATTA CGAGCCACGC AGCAGCGCCT
CTTCGCGCCG CGGCGTTTTC ATTGTCGCCC CCGGACCCAG ACGAGCGAGA TATAGTGACA
AAGAAAGTGG AAAAGAAAAC GACCGCCCTT GAAGTAGCGG TCAAGGTCGA GGCTCCTGCC
GAGACCGTGG TGGTCGAGGC CGCTGTCGCC CCGGTTGCGG CCATTGACCC GAAGGCTGCG
CTCGCCAAGC CGGCCAAGGC CTCCGGCTCG CGCCAGAGCG GATTCAAGCC GAACGAATAC
ATCGTTTATC CGGCGCATGG GGTCGGTCAG ATCGTCGCGA TCGAAGAACA GGAAGTGGCT
GGCTTCAAGC TCGAACTGTT CGTCATCAGC TTCGTCAAGG ACAAGATGAT TCTCAAGGTG
CCGACGCCCA AGGTGACGAG CGTCGGGATG CGCAAACTCG CCGAGGCCGA TGTCGTCCGC
CGTTCCCTCG ACACGCTGGC CGGCCGGGCG CGCATCAAGC GCACCATGTG GTCGCGCCGG
GCGCAGGAAT ATGAGGCGAA GATCAATTCG GGCGATTTGA TCGCGATCGC TGAAGTCGTT
CGCGATCTTT ACCGTTCGGA TTCGCAGCCG GAGCAGTCCT ATTCGGAGCG TCAGCTCTAT
GAGGCCGCGC TCGACCGCAT GGCGCGGGAA GTCGTCATCG TGGAGAAGCT GACGGAGACC
GAAGCGCTGA AGGCGATCGA GGCGCAGCTG CAGAAGGGTC CGCGCCGCGG CGGCAAGGCG
GAAGAGATTG AAGTCGACGA CACGGAAACG GAGATCGAGC AAGCCGCCTG A
|
|---|
| Protein sequence | MRSVKKTLQP SKIKSAAPAN ASKQLKASSS TIKAKTGQDA GEPKIKARSA AAPSKRAAAA
DSSRAKSAPK SAAKIIADAA AVTKDSAAGK ERRTADQRKA ERETVKRTAP EAKADASVKP
SSSDKSLSTK NTSIKNSSAK NASAKKTSAG KNSANPAPED ADKKSEPAPS VSAVSVARFQ
AARTAAAAAQ QKITSHAAAP LRAAAFSLSP PDPDERDIVT KKVEKKTTAL EVAVKVEAPA
ETVVVEAAVA PVAAIDPKAA LAKPAKASGS RQSGFKPNEY IVYPAHGVGQ IVAIEEQEVA
GFKLELFVIS FVKDKMILKV PTPKVTSVGM RKLAEADVVR RSLDTLAGRA RIKRTMWSRR
AQEYEAKINS GDLIAIAEVV RDLYRSDSQP EQSYSERQLY EAALDRMARE VVIVEKLTET
EALKAIEAQL QKGPRRGGKA EEIEVDDTET EIEQAA
|
|---|
| |