| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_1021 |
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| Symbol | |
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| ID | 7091849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 1107758 |
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| End bp | 1108924 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643464360 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_002361352 |
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| Protein GI | 217977205 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.000463021 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCGGATC TCGCCCATAC CGCCGTCGAA TTGTGCCGCG AGCTGTTGCG GCGCCCCTCT
GTGACGCCGC TCGACGCCGG CGCCCAGGAC TTTCTGGCGG CAAAGCTTCG CGAGGCCGGA
TTTGCCACGC ATAGCGTCGT TTTCTCGGAT GAGAGCACGC CCGATATTCA AAATCTCTAC
GCCCGCGCCG GCGCCGGCGG CCGGCATCTC GTCTTCGCCG GACATACCGA CGTCGTGCCG
CCGGGAGATT CGGCGAGCTG GCGCTTCGAT CCGTTCGGCG GCGAAATGGA GGGTGGCCTG
ATTTTCGGCC GCGGCGCCGT GGACATGAAG GGCGCGATCG CCGCTTTCGC CGCCGCCGCC
ATGGCTTTCG TCGCCGAGGG CGGCGCGCAA AAAGGGTCGA TCAGCTTCCT TATCACGGGC
GACGAGGAAG GTCCGGCGAT CAACGGCACC GACAAGCTGC TGCGCTGGGC GCATCAGCGC
GGCGAGCGCT TCGATCATTG TATTCTCGGC GAGCCGACCA ACCAGCAAGC ACTCGGCGAC
ATGATCAAGA TCGGTCGGCG CGGTTCGCTG AACGGGACGC TGACCGTGAA AGGCGTGCAG
GGCCATGTCG CCTATCCGCA TCGCGCCAAA AATCCCATTC CACACCTGAT GCGGCTGCTG
GCGGCGCTCA CGGCGGAGCC GCTCGACCAG GGCACGGAGC TGTTCGACGC CTCCAATCTC
GAAATCGTCA GCGTCGACGT TGGCAATCCG ACCTTCAACG TCATTCCGGC CGAGGCGCGG
GCGCGCTTCA ACATCCGCTT CAACGATATC TGGACGCCGG ATGCGCTCGC GGCCGAGCTA
CGCGCGCGCG CCGAGAAGGC GGGGGCGGCA GCGGGCGCCG CTTCCGCGCT CCATTTTGAA
CCCTGCAATG CGCTGGCCTT CGTGACGCAG CCCGACGCGT TTACCGATCT TGTCAGCGCG
GCGATCGAAC AGGCGACCGG ACGCAAACCA AAGCTCTCGA CGAGCGGGGG CACGTCCGAC
GCCCGGTTCA TCCGCGCCTA CTGCCCCGTT CTCGAATTCG GCCTTGTCGG CTCGACCATG
CACGCCGTCG ACGAACGCGC GCCGGTCGAG GATATCTCTG CGCTTGCGTC AATTTACGCA
GACATATTGA ATTCTTACTT TAAGTAG
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| Protein sequence | MSDLAHTAVE LCRELLRRPS VTPLDAGAQD FLAAKLREAG FATHSVVFSD ESTPDIQNLY
ARAGAGGRHL VFAGHTDVVP PGDSASWRFD PFGGEMEGGL IFGRGAVDMK GAIAAFAAAA
MAFVAEGGAQ KGSISFLITG DEEGPAINGT DKLLRWAHQR GERFDHCILG EPTNQQALGD
MIKIGRRGSL NGTLTVKGVQ GHVAYPHRAK NPIPHLMRLL AALTAEPLDQ GTELFDASNL
EIVSVDVGNP TFNVIPAEAR ARFNIRFNDI WTPDALAAEL RARAEKAGAA AGAASALHFE
PCNALAFVTQ PDAFTDLVSA AIEQATGRKP KLSTSGGTSD ARFIRAYCPV LEFGLVGSTM
HAVDERAPVE DISALASIYA DILNSYFK
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