| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_0944 |
|---|
| Symbol | |
|---|
| ID | 7093623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 1028181 |
|---|
| End bp | 1029344 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643464283 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002361275 |
|---|
| Protein GI | 217977128 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.00241764 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAAACGCA CAATCAGTCT TATCGTGGTT TTCCTCGTCC TCGCCGGGCT CGCCGCCGGA
CTGGGCTATT TTCAATTCGT CACCAAGCCG CAGATGATCC GGCAATTCAT TTCCCAGGCG
GCGCCGCCGC CGGCGACGGT CGCGGTCGCC GAGGCGATGG ATGAATCCTG GACGCCGCAA
TTGCCGGCGA TCGGAAGTTT CCGCGCGGTG CAGGGCATCG ACGTTGCGCC GCAGATCGGC
GGCACGCTCG TCGCCGTCAA GGCGCAGTCG GGTCAGGACG TCGACAAGGG GGCGCCGCTG
TTCGAGATCG ACAATTTCGT CGAGCAAGCC GATCTCAAGA ACAATCTTGC CGTCCTCAAG
AACGCCGATC TCGCGCTTCA GCGCCAGCGT CAGCTGACCG TCACCGGCAA TACGGCGAAA
GCAAACTTCG ACTCGGCCGA GGCGACGCGC GATTCCGCCG CCGCCGCCGT GGAGAAGGTT
CGCGCCGCGA TCGCGCAGAA GCAGATCGTC GCGCCCTTCG CGGGACGGCT CGGCATCCGC
AAGATGGATC TTGGCCAATA TGTCTCGCCG GGTACGACCC TGATCACCTT GCAGCAGCTC
GATCCGATCT ATGTGGATTT TCCCGCGCCG GAAAAATGGC TCGGCATGCT GAAGCCCGGC
CAGGAGATCG AGGTCGCGGT CGACGCCCAT CCCGGTCAGA TTTTCCGGGG CAAGGTCGAG
ACGGTCGACG CGCGCGTCGC CGCCGACAGC CGCAATGTGC TGGTGCGCGG CCTGTTCGCA
AACAAGGACA GGCTGCTTTT GCCGGGCATG TTCGCCAATG TGATGGTCGG CGCCGGCGCC
CCGGTCGAGG TCACGACCGT GCCGCGCACG GCGGTCACCT ATTCGCTCTA TGGCGACACT
GTCTTCGTCG TCAAGCCGGC CGATCCCGCC CCGCAGGCGG GCGCGGCCCA GGCGGCCCCC
GGCGGCGCCG AACAGCCGAT GAAGCTGGAA CGCCGTTTCG TTCGGCTCGG CGAGACGAAG
GCCGATCGCG TCGCGATTCT CGACGGCGTC AAGCCGGGGG AGCTCGTCGT AAGCGAAGGC
CAGGTCAAGC TTGCGCCTGA TATGGCCGTG AAAATCGATC CGGACGCGAA ACTGTCGCCG
CCCCCCGTCC GCCCGAAGGA ATGA
|
|---|
| Protein sequence | MKRTISLIVV FLVLAGLAAG LGYFQFVTKP QMIRQFISQA APPPATVAVA EAMDESWTPQ
LPAIGSFRAV QGIDVAPQIG GTLVAVKAQS GQDVDKGAPL FEIDNFVEQA DLKNNLAVLK
NADLALQRQR QLTVTGNTAK ANFDSAEATR DSAAAAVEKV RAAIAQKQIV APFAGRLGIR
KMDLGQYVSP GTTLITLQQL DPIYVDFPAP EKWLGMLKPG QEIEVAVDAH PGQIFRGKVE
TVDARVAADS RNVLVRGLFA NKDRLLLPGM FANVMVGAGA PVEVTTVPRT AVTYSLYGDT
VFVVKPADPA PQAGAAQAAP GGAEQPMKLE RRFVRLGETK ADRVAILDGV KPGELVVSEG
QVKLAPDMAV KIDPDAKLSP PPVRPKE
|
|---|
| |