| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_0909 |
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| Symbol | |
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| ID | 7093344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 994697 |
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| End bp | 997114 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643464249 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002361241 |
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| Protein GI | 217977094 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.793401 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTGAGAC TCCAGGGCCG CGCCAAAGTT TATCTTTCGA GCCGCGCGAT TTCGGCTGGC
TTGATCGTAT GTATCATCGT TCTCGTTGCA GCCTGCGCGC AGACGCCGCT GATCGGCGGC
GGCAATGAAG CGCCGGACGC CGTCGATCGC GTTCGCGGCC TCGATCTGCA GCCGCGCTTT
CCGAAATCGA GCGATACGGT TAACACCGGC GTCGGCGGCA ATGACCGTCC GCAGCTCTAC
TATGGCAGCG CCGCGGACGG TGCCGCGCCT CCCCCTGGCG GAAGCGATAG CGCCGGCGCA
GGATCCGGCG CTGGCGGCGG GGGCGTCGAT CTCAACTTTG AAAATGCGCC GATCACCGCG
GTGGCCAAGG TCATCCTCGG CGACGTGCTT GGCGTCGGCT ATGCCGTCGA CCCGCGCGTG
CAGGGCACAA TCACGCTGTC GTCGGGGCGG CCCGTGCCGA AATCGCGGCT GCTGTCCGTC
CTCGAGAGCG CGCTGCGCAC CAGCAACGCC GTCCTGGTGA ATGACGCCGG CGGCTATCGC
ATCATTCCGG TCGACGACGC CGTCGGAAAT GGAAGCGTCG ATCGCGGCGG CTCCCGGCTC
GAGCCGGGCT ACGGTATGAC CGTGGTTCCG GTCCAGCATG TTTCGGTCCA GACCATCAAC
AAGCTGCTCG AAGGCTTCGC CACGCGGCCC GGCGCGATCC GTGTCGATTC CGGGACGAAT
ATGGTCATCA TCGTCGGCAC CGGGGTCGAG CGCCGCACCG CCGTCGACAC GGTCCTCAGC
TTCGACCAGG ACTGGATGCG CGGCCAATCG GTCGGCATTT TTCCGGTGAA GAACACGACT
CCCGAGCCGA TCGTCGTCGA ACTCGAGAAG ATTCTCGACT CGGGCGAGGC CGGCCTCAGC
CAGAACATGG TGAAGCTGCA GGCGATGAAC CGCTCCAACG CCGTGCTCGT GGTGGCGCGC
AAGCCCGAGC TTTTGCGCGC GGCGGCGACC TGGATCGCCC GTCTTGACGG ATCGGCGACG
GCAAGCACCG GCGTCAAGGT TTACCGCGTC CGCTACGGCG ATGCGAAGCT GATCGCAAGA
CTGCTCAGCG ACCTCTTCAC CGGCGGCGGC GGCAGCAGCG ACAGCGCCGC GAATTCGCTG
GCGCCAGGGT CCGGCTCCTC TGTGTCCACC ACCGACCGCC TGACGGGCGG AACCGCGTCT
CTCGCCGCAT CGGCGGGCGG AGGCGGATCG GCCGGTTCAT CGCTTGGCGC CGGCTCTGGC
TCCAGTAGTT CCTCGTCATC CCTTGGCGCT GGCGCAGGTT CATCGTCAGG CGCCGGTTCG
CAGAGCCCGT TCGGCACGCT CGGCACCGCC GCGGGCGCCG CAGGCGGCGC CGATAGTTCG
GCGGGGGGCG GCGCAGGCTC CAGCTCGGGA GGACTTGGCG GCGGCGGCGG CGGCAAAGGT
CCCGTGCTGC TTCCGGGCGT CAGGATCATG GCCGACGCGG CCAATAATTC CGTCGTCATC
TACGCCAATC AGGAAAGCTA CCGGATCATC GAAAAAGCGC TGGAGCAGCT CGACCGGCCA
AAGCTGCAGG TCGCGATTGA CCTGACCATC GCCGAGGTGA CGTTGAACGA CACGCTGAAC
TATGGCGTGC AGTTTTTCCT CGGCAGCAGC AATCTCGGAC TTGGCGCCAA CAATGGCTTC
GTCACCAATA CGGCGGCGGG CGTGCCGCTG GCGCAGACGG GAGGCGTCGC CTCTGCCGCC
GGCACATTGC CCGGCTTCAA TCTCACCATC GGCAATGCGT TGAGCCCGCG CGCCATCATC
AACGCGCTGC ATCAATATAC CGACGTCAAG GTGCTCTCCA ATCCTTCGCT GGTCGTCGTC
GACAATCAGG TCGCGACTCT GCAGGTGGGC GATGAAATCC CGATCCAGAC CGGTTCGGCG
ACGGTGCTTT CGGCCAATAA CGCCGTCGTC AACACGATCG ACTATAAGAA CACCGGCATC
ATCTTGCGCG TGCAGCCGCG CGTGAATTTC AATGGCAATG TCTCGCTCGA CGTCGAGCAG
GAGATCAGCA ATCAGGCGGG AACGAGCGCG CTCGGACCGA CCTTCTCGCA GCGCAAGGTC
AAGAGTTCGA TCCTCGTCGC CAGCGGGCAG ACCGTGCTGC TCGCCGGGCT GATCAGCGAT
GGCGTCAATG GCACAAAGGC CGGCATTCCG GTCGCTGACC AGATTCCTGT CCTCGGCAAT
CTTTTCAACA ATAGCTCAAA CAGGCTGGTC AGCCGAACGG AACTCATCAT CTTCATCCGG
CCGCAGATCA TCCGCGACGG CGTCGACGCC TCTTTCGTGG CCGAGGAGCT GCGCTCCAAG
CTGCGCGGCA ACAAGGTCGG CGACATCTAT CCGACGGGCG CAGTGACGCC GATCCCGCTG
CGGGCGCTGC AGCAATGA
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| Protein sequence | MLRLQGRAKV YLSSRAISAG LIVCIIVLVA ACAQTPLIGG GNEAPDAVDR VRGLDLQPRF
PKSSDTVNTG VGGNDRPQLY YGSAADGAAP PPGGSDSAGA GSGAGGGGVD LNFENAPITA
VAKVILGDVL GVGYAVDPRV QGTITLSSGR PVPKSRLLSV LESALRTSNA VLVNDAGGYR
IIPVDDAVGN GSVDRGGSRL EPGYGMTVVP VQHVSVQTIN KLLEGFATRP GAIRVDSGTN
MVIIVGTGVE RRTAVDTVLS FDQDWMRGQS VGIFPVKNTT PEPIVVELEK ILDSGEAGLS
QNMVKLQAMN RSNAVLVVAR KPELLRAAAT WIARLDGSAT ASTGVKVYRV RYGDAKLIAR
LLSDLFTGGG GSSDSAANSL APGSGSSVST TDRLTGGTAS LAASAGGGGS AGSSLGAGSG
SSSSSSSLGA GAGSSSGAGS QSPFGTLGTA AGAAGGADSS AGGGAGSSSG GLGGGGGGKG
PVLLPGVRIM ADAANNSVVI YANQESYRII EKALEQLDRP KLQVAIDLTI AEVTLNDTLN
YGVQFFLGSS NLGLGANNGF VTNTAAGVPL AQTGGVASAA GTLPGFNLTI GNALSPRAII
NALHQYTDVK VLSNPSLVVV DNQVATLQVG DEIPIQTGSA TVLSANNAVV NTIDYKNTGI
ILRVQPRVNF NGNVSLDVEQ EISNQAGTSA LGPTFSQRKV KSSILVASGQ TVLLAGLISD
GVNGTKAGIP VADQIPVLGN LFNNSSNRLV SRTELIIFIR PQIIRDGVDA SFVAEELRSK
LRGNKVGDIY PTGAVTPIPL RALQQ
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