Gene Msil_0888 details

Gene Information

• Locus tag: Msil_0888
• ID: 7093322
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylocella silvestris BL2
• Kingdom: Bacteria
• Replicon accession: NC_011666
• Strand: +
• Start bp: 974564
• End bp: 975283
• Gene Length: 720 bp
• Protein Length: 239 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643464227
• Product: porin
• Protein accession: YP_002361220
• Protein GI: 217977073
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3637] Opacity protein and related surface antigens

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 0.0164958
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTCCGCA GAGCGCTTTT GACGACGACG ACGCTTGCCG TTTTTGCGGG CGCGGCGCTT 
GCCGCAGACC TGCCCTATGG ACAGGAGTCT GGCGGCTACG CGCCCGCCCC GATCTTTACC 
TGGAGCGGCC TCTATCTCGG CGGCCAGATC GGCTATGGCT GGGCGAACAA CGCCCTATCC 
GGCTGGGGTC CCTTTTTCGT CTTTTCCGGC GCAAGCTATA ATCCCAGCGG CGTCCTCGGC 
GGCGCCCATG TCGGTTATAA TCTTCAATTC AACCAGATCG TGCTCGGCCT TGAGGGCGAT 
GTCGAAGCGA CCGGCGTCGA CAAAACCTAT GCGTTTGGGC CGACCGTCTA TACGACGCAA 
ATTCCGGTGC AGGGCTCGAT CCGCGCGCGC TTCGGCTTCG CGGTCGATCG CGCTTTGTTT 
TACGTGACGG GAGGCGCAGC CTTCGCCAGC GTCACCAATC AATACCAGTC CTATCTTGGC 
TATAATTCGC TGAACCGCTC GTTCGCCGGC TGGACGATCG GCGGCGGGCT TGAATATGCG 
CTGACAAATA ATTGGTCGGT GCGGGCGGAA TATCGCTATT CCGACTTCGG CACGGCGACG 
GATTATACGT TCACGGCCGG CCCGGGCGGC AATGTCGCGC GCCATCTCAC GGAAAACGCG 
GCGCGAGTCG GATTCAGCTA TAAATTCGAC GGACTCTTTG CGCCGTCTTA CGCGCGATAG 

 

Protein sequence

MLRRALLTTT TLAVFAGAAL AADLPYGQES GGYAPAPIFT WSGLYLGGQI GYGWANNALS 
GWGPFFVFSG ASYNPSGVLG GAHVGYNLQF NQIVLGLEGD VEATGVDKTY AFGPTVYTTQ 
IPVQGSIRAR FGFAVDRALF YVTGGAAFAS VTNQYQSYLG YNSLNRSFAG WTIGGGLEYA 
LTNNWSVRAE YRYSDFGTAT DYTFTAGPGG NVARHLTENA ARVGFSYKFD GLFAPSYAR