| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3975 |
|---|
| Symbol | |
|---|
| ID | 7086190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 4733366 |
|---|
| End bp | 4735528 |
|---|
| Gene Length | 2163 bp |
|---|
| Protein Length | 720 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643462850 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_002359871 |
|---|
| Protein GI | 217975120 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT TAAAAGTAGC CGCTAGCTTA TCTGTTAGAT CTTGTTTCGA TATCGACAGA
GAAGTCGTCA ATGTATTAAC CACAGATTTT TGCGATGTGG GCGCGGCTGT AGTCTCTGTT
GATGATGTTA GAAATGGTAT TGTTGAAAAG ATTAAAAACA CCGGATTGAA ACTACCGATT
TTCGTTTCAG TTTGCTGCGA AGAAACTTTC CCAGACGATG TTTGCTCATC TATTACTGGG
GTATTTGAAC TCTGCGGCGA TAACACTGAC TTCTACGGAA AACAGGTTGA AACTGCGGTC
GATAAATATG AGCAAGCGCT ATTACCTCCT TTCTTCGGCA CACTGAAAAA GTACGTTGAG
ATGGGTAATT CCACCTTTGC TTGTCCAGGT CACCAAGGCG GACAATTCTT CCGTAAACAT
CCTGTGGGTC GTCAGTTCTT CGACTTTTTT GGCGAAACGA TTTTCCGCGC CGACATGTGT
AATGCCGACG TAAAATTGGG TGATTTATTG ATCCATGAAG GCGCACCACT GGCAGCGCAG
AAATATGCTG CCAAAGTCTT TAATGCCGAT AAAACCTACT TTGTACTTAA CGGGACTTCA
TCTTCAAATA AAGTGGCGAC CAATGCGCTG CTTGCTAAAG GTGACCTAGT ATTATTCGAC
CGCAATAACC ACAAATCAAA CCACCATGGC GCGTTAATCC AAGCTGGTGC AACACCCGTT
TATTTAGAAA CCGCACGTAA TCCCTTCGGA TTTATTGGTG GTATCGACGC TCATTGCTTC
CAAGAGTCCT ATTTAAGAGA TCAAATTCGC GAAGTCGCCC CAGAAAGAGC CGATGAAAAA
CGCCCCTTCC GTTTAGCGAT AATCCAACTC GGCACCTATG ACGGCACCAT CTACAATGCT
CGCCAAGTAA TTGATAAAAT TGGTCATCTA TGTGATTACG TCTTATTTGA CTCGGCTTGG
GTCGGTTACG AACAGTTCAT CCCTATGATG AATGACTGCT CGCCACTCTT GCTCGAACTG
ACCGCTGAAG ATCCTGGCAT TATCGTGACT CAGTCGGTGC ATAAACAGCA GGCGGGCTTC
TCGCAAACAT CGCAAATCCA TAAAAAAGAT AAACATATCA AAGGACAAGA TAGATATTGC
AACCATAAAC GCTTCAACAA CGCCTTTATG ATGCATGCCT CTACCAGTCC CTTCTATCCA
TTATTTGCGG CGCTAGATGT GAACGCGAAA ATGCACGAAG GTGCGAGTGG TCGTTACCTG
TGGCGCGAAG CGGTAAAAGC CGGCATCGAA GCACGTAAGC TACTGCTGAA AAAGTGTAAA
TATATCAAGC CATTCGTGCC AACCATGATA GATGGTCGCC TATGGCAAGA CTATGAAACA
GAGCAAATGG CCGATGACTT ACGTTTCTTC GAATTCGAAC CCGGTCAGAA ATGGCACTCC
TTCGAAGGTT ATGACAAAGG CCAATACTTC GTTGACCCTT GTAAGTTCCT ATTAACAACA
CCAGGCATAG ATGTAGAAAC CGGTAAATAT ACCGACTTTG GTATTCCAGC AACTATTTTG
GCTAACTTCT TACGGGAAAA TAATATTATT CCTGAGAAGT GCGACTTAAA TTCGATTTTA
TTCCTGATGA CGCCTGCGGA AGATATGGCC AAGATGCAAC ATCTGGTCTC GCAAATATCT
CGATTCGAGA AATTAGTCGA TGAAGATGCG CCATTATCTG AAGTTTTACC TAACGTCTAT
AACGCGAATA AAGCGCGTTA TCAAGACTAT ACCATCCGCC AACTTTGCCA AGAAATGCAC
AATCTTTATG TCAGCCATGA TGTAAAACAA CTGCAGAAAG AAATGTTCCG TAAAGCGCAT
TTCCCAACCA AAGTCATGGA TCCACAGGAA GCAAACCTAG AGTTTATTCG TGGCAAAGTC
GAATTAGTCC CACTATCAAA AATTGAGGGA AGAATCGCCG CAGAAGGCGC ACTTCCTTAC
CCACCAGGTG TGTTATGTAT GGTACCAGGT GAAATATGGG GTGGCTCTGT TCAACGTTAT
TTCCAAGCTC TCGAAGAAGG TATCAACTTA TTACCTGGAT TCTCGCCAGA ACTACAAGGT
GTTTATCTCG AAAACACTCC TGACGGCAAA ATTCAAGCAA TGGGCTATGT ACTAAATAAA
TAA
|
|---|
| Protein sequence | MKSLKVAASL SVRSCFDIDR EVVNVLTTDF CDVGAAVVSV DDVRNGIVEK IKNTGLKLPI
FVSVCCEETF PDDVCSSITG VFELCGDNTD FYGKQVETAV DKYEQALLPP FFGTLKKYVE
MGNSTFACPG HQGGQFFRKH PVGRQFFDFF GETIFRADMC NADVKLGDLL IHEGAPLAAQ
KYAAKVFNAD KTYFVLNGTS SSNKVATNAL LAKGDLVLFD RNNHKSNHHG ALIQAGATPV
YLETARNPFG FIGGIDAHCF QESYLRDQIR EVAPERADEK RPFRLAIIQL GTYDGTIYNA
RQVIDKIGHL CDYVLFDSAW VGYEQFIPMM NDCSPLLLEL TAEDPGIIVT QSVHKQQAGF
SQTSQIHKKD KHIKGQDRYC NHKRFNNAFM MHASTSPFYP LFAALDVNAK MHEGASGRYL
WREAVKAGIE ARKLLLKKCK YIKPFVPTMI DGRLWQDYET EQMADDLRFF EFEPGQKWHS
FEGYDKGQYF VDPCKFLLTT PGIDVETGKY TDFGIPATIL ANFLRENNII PEKCDLNSIL
FLMTPAEDMA KMQHLVSQIS RFEKLVDEDA PLSEVLPNVY NANKARYQDY TIRQLCQEMH
NLYVSHDVKQ LQKEMFRKAH FPTKVMDPQE ANLEFIRGKV ELVPLSKIEG RIAAEGALPY
PPGVLCMVPG EIWGGSVQRY FQALEEGINL LPGFSPELQG VYLENTPDGK IQAMGYVLNK
|
|---|
| |