| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3887 |
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| Symbol | |
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| ID | 7086650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 4613228 |
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| End bp | 4614196 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643462764 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_002359785 |
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| Protein GI | 217975034 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000216775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000134738 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGATTG GACCCTATCA ACTGAACAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC
ACCGATCAAG CTTTCCGTAA TCTTTGTCTT CGTTATGGCG CAGCCCTAGC GGTTTCCGAG
ATGCTTTCAT CCAATCCTGA GGTTTGGGAT ACAGATAAAA GCCGCCAGCG CATGACGCAT
TCTGGCGAGG AAGGCATCCG CTCAGTGCAA ATTGCAGGAG CCGATCCTGA TTTAATGGCG
CAAGCCGCGT TGTTCAATGT TGAACAAGGC GCTCACATCA TTGATATCAA TATGGGTTGC
CCCGCGAAAA AAGTGAATAA AAAGCTGGCT GGCTCAGCGC TGATGCAAAA CCCGCCGCTG
GTAAAAGAAA TTTTACAAGC CGTGGTCGCC GCAGTGAATG TGCCCGTCAC GTTAAAGATT
CGCACCGGCT GGGAGCCAGA ACACAAGAAT GGTGTTCAAA TCGCCCAGAT TGCCCAAGAT
TGTGGCATCG CCTCGCTCGC CGTTCACGGT CGCACGAGAC AATGTATGTA CAGAGGCGAC
GCTGAGTACG ACACGATCAA AGCAATCAAA CAGAATGTCT CGATTCCTGT CGTCGCTAAT
GGGGATATCG ACAGTCCGGA GAAAGCCCGC TTTGTGCTGG AATACACCGG TGCCGATGCC
TTGATGATAG GACGGGGTGC TCAAGGACGG CCTTGGATTT TCAGAGAAAT CCAGCACTAC
TTGGAAACGG GTAATAAGCT AGCGCCCATT GAGGTTGCCG AACAGCGTCA AGTGATGCTG
GAACACCTCA CCAAACTGTA TGATTTGTAT GGTGAATACA AGGGTATCCG CTTCGCCAGA
AAACATATGG GATGGTACCT AGACCAAGAA GCTCAGCGCC AATTTAGGGC TGACTTTAAT
CGGCTGGAAA CCGCTGCAGA ACAGTATTCC CTCGTGGAAT GTTATTTTGA TGAATTAGTA
CAGAATTAA
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| Protein sequence | MQIGPYQLNN QLIVAPMAGV TDQAFRNLCL RYGAALAVSE MLSSNPEVWD TDKSRQRMTH
SGEEGIRSVQ IAGADPDLMA QAALFNVEQG AHIIDINMGC PAKKVNKKLA GSALMQNPPL
VKEILQAVVA AVNVPVTLKI RTGWEPEHKN GVQIAQIAQD CGIASLAVHG RTRQCMYRGD
AEYDTIKAIK QNVSIPVVAN GDIDSPEKAR FVLEYTGADA LMIGRGAQGR PWIFREIQHY
LETGNKLAPI EVAEQRQVML EHLTKLYDLY GEYKGIRFAR KHMGWYLDQE AQRQFRADFN
RLETAAEQYS LVECYFDELV QN
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