| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3856 |
|---|
| Symbol | aceE |
|---|
| ID | 7088891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 4579777 |
|---|
| End bp | 4582443 |
|---|
| Gene Length | 2667 bp |
|---|
| Protein Length | 888 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643462735 |
|---|
| Product | pyruvate dehydrogenase subunit E1 |
|---|
| Protein accession | YP_002359756 |
|---|
| Protein GI | 217975005 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000000907125 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAG ATATGCTACA AGACGTAGAT CCATTAGAGA CTCAGGAATG GGTTGATGCC
CTGCAAGCCG TGTTGGAACA GGAAGGCCCA GAGCGCGCGC ATTTTTTACT AGAGAAGCTG
ATCGATAAAG CGCGTCGTAA TGGCACTCAC TTGCCTTACA ATGCCACAAC GGCTTACTTG
AACACTATCC CAGCGGGTCA AGAGCCTCAC ATGCCTGGCA ACCAAGAGAT GGAACGTCGC
ATTCGCGCCA TCATCCGTTG GAACGCTTTG GCTATGGTTC TGCGTGGTTC TAAGAAAGAT
TTAGAGTTGG GCGGCCATAT CTCAAGTTTC GCTTCAAGCG CGACTATCTA CGACGTATGT
TTTAACCACT TCTTCCGTGC ACCGAATGAA AAAGACGGTG GCGATCTCGT GTATTTCCAA
GGCCATATCG CCCCAGGTAT TTATGCGCGT TCATTCCTAG AAGGTCGTTT AAGCGAAGAG
CAACTGGCTA ACTTCCGTCA AGAAGTGGAT GGCAAGGGTC TGTCTTCATA CCCACATCCA
AAACTGATGC CGGATTACTG GCAATTCCCA ACGGTTTCTA TGGGCTTAGG TCCAATCCAA
GCCATCTATC AAGCCCGTTT CCTGAAATAT CTGACTGATC GTGGTCTGAA AGATTGTTCA
GCACAAACTG TTTACTGTTT CTTAGGTGAC GGTGAGTGTG ACGAGCCAGA AGCCTTAGGC
GCGATCGGTT TAGCAGCCCG TGAAGAATTA GATAACTTAG TCTTCATCGT TAACTGTAAC
TTACAGCGTC TTGATGGCCC TGTACGTGGT AACGGTAAGA TCATCCAAGA ACTTGAAGGC
GAATTCCGCG GCGCAGGCTG GGAAGTGGTG AAAGTGATTT GGGGTCGTTA CTGGGATCCA
TTATTGGCCC GTGACACCAG CGGTAAACTA CTGCAGTTGA TGGAAGAAAC CGTTGACGGT
GAATACCAAA ACTGTAAAGC CAAAGGTGGC GCTTATACAC GCGAACACTT CTTTGGTAAG
TATCCTGAAA CGGCCGAAAT GGTTGCGAAC ATGTCAGATG ATGACATTTG GCGCTTAAAC
CGTGGCGGTC ATGATCCAGT TAAAGTTTAC GCTGCACTGG AACATGCACA AAAAACCAAA
GGCCGTCCAA CAGTTATCCT AGCTAAAACC GTTAAAGGTT ACGGCTTAGG TGATGCGGGT
GAAGGTAAAA ACATCGCTCA CAACGTGAAG AAGATGGGCG TTGAGTCTAT CCGTTACTTC
CGCGATCGTT TCAATATCCC GATCCCTGAT GACCAGTTAG AAGATCTGCC TTTCTATCAC
CCAGGTCCAG ATTCTGAAGA AGTGAAGTAC ATGATGAGCC GTCGTGAAGC GCTGCATGGT
AGCGTGCCAC AACGTCGTCA AAAGTTCACT GAAGAGATGG AAGTGCCGTC ACTGAAGATT
TTCGATTCGA TTTTACAGGG CTCAAACGGC CGTGAAATCT CATCGACTAT GGCGTTCGTT
CGCGTGCTGA CAGCATTGCT GAAAGACAAG AAAATTGGCA AAAACATTGT GCCAATTATT
CCTGACGAAG CCCGTACTTT CGGTATGGAA GGTCTGTTCC GTCAAGTGGG TATTTATGCT
CACGAAGGCC AAAAATACGT ACCGCAAGAC TCTGACCAAG TGGCTTATTA TCGTGAAGAT
AAAACTGGTC AAGTATTGCA AGAAGGGATT AACGAGCTCG GTGCTATGTC TTCATGGGTA
TCGGCAGCGA CAAGCTACTC TGTCAACGAT ACACCTATGA TCCCGTTCTA CATCTACTAC
TCAATGTTCG GTTTCCAACG TATTGGTGAC ATGGCTTGGG CTGCGGGTGA CATGCGTGCT
CGTGGTTTCT TAGTCGGTGG TACTTCAGGT CGTACAACGC TTAACGGCGA AGGTTTACAG
CATCAAGATG GTCACAGCCA CGTTTTGGCG AACACTATCC CTAACTGTAT TTCTTACGAT
CCAACCTACG GCTACGAAAT TGCCGTTGTG GTACAAGATG GTATCCGTCG TATGTACGGC
GAGAATCAAG AAGATATCTT CTACTACTTG ACCACAATGA ACGAAAACTA TGAGCAACCA
GCCATGCCAG AAGGCGCGGA AGTGGGCATA GTTAAAGGTA TCTATAAGTT AGAAACGGTT
GCGGGCTCAG GTAAAGGCAA AGTTCAGTTA ATGAGCTGTG GCACTATCCT TGAACAAACC
CGTAAAGCGG CGCAAGCACT GGCGAAAGAC TTCGGTATTA CTGCCGACGT ATTTAGCGTG
ACTAGCTTCA ACGAATTGAC TCGCGATGGT CAAGCCGCTG AACGTTGGAA CATGCTGCAC
CCAACCGAAA CGCCAAAACA AGCCTATATC AGCCAAGTGA TTTCAAGTGA TGCACCTGCA
ATCGTAGCGA CTGACTATAT GAAGATTTAC GGCGAACAGT TACGTGCTTA TATCCCTACC
GATTACAAAG TGTTAGGTAC TGACGGTTTC GGTCGTTCAG ACAGCCGCGA CAATCTGCGT
CATCACTTCG AAGTGGATGC TAAGTTCATC GTTATTGCGG CGCTGAAATC ACTGGTTGAT
CGCAAAGAGC TGCCTGTCGA TGTGTTAGTA AAAGCCATTA AAGAATATGG TATCGACGCT
GACAAGATCA ATCCACAGTA CGCGTAA
|
|---|
| Protein sequence | MSEDMLQDVD PLETQEWVDA LQAVLEQEGP ERAHFLLEKL IDKARRNGTH LPYNATTAYL
NTIPAGQEPH MPGNQEMERR IRAIIRWNAL AMVLRGSKKD LELGGHISSF ASSATIYDVC
FNHFFRAPNE KDGGDLVYFQ GHIAPGIYAR SFLEGRLSEE QLANFRQEVD GKGLSSYPHP
KLMPDYWQFP TVSMGLGPIQ AIYQARFLKY LTDRGLKDCS AQTVYCFLGD GECDEPEALG
AIGLAAREEL DNLVFIVNCN LQRLDGPVRG NGKIIQELEG EFRGAGWEVV KVIWGRYWDP
LLARDTSGKL LQLMEETVDG EYQNCKAKGG AYTREHFFGK YPETAEMVAN MSDDDIWRLN
RGGHDPVKVY AALEHAQKTK GRPTVILAKT VKGYGLGDAG EGKNIAHNVK KMGVESIRYF
RDRFNIPIPD DQLEDLPFYH PGPDSEEVKY MMSRREALHG SVPQRRQKFT EEMEVPSLKI
FDSILQGSNG REISSTMAFV RVLTALLKDK KIGKNIVPII PDEARTFGME GLFRQVGIYA
HEGQKYVPQD SDQVAYYRED KTGQVLQEGI NELGAMSSWV SAATSYSVND TPMIPFYIYY
SMFGFQRIGD MAWAAGDMRA RGFLVGGTSG RTTLNGEGLQ HQDGHSHVLA NTIPNCISYD
PTYGYEIAVV VQDGIRRMYG ENQEDIFYYL TTMNENYEQP AMPEGAEVGI VKGIYKLETV
AGSGKGKVQL MSCGTILEQT RKAAQALAKD FGITADVFSV TSFNELTRDG QAAERWNMLH
PTETPKQAYI SQVISSDAPA IVATDYMKIY GEQLRAYIPT DYKVLGTDGF GRSDSRDNLR
HHFEVDAKFI VIAALKSLVD RKELPVDVLV KAIKEYGIDA DKINPQYA
|
|---|
| |