| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3845 |
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| Symbol | |
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| ID | 7088880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 4557315 |
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| End bp | 4559894 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643462724 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002359745 |
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| Protein GI | 217974994 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000425385 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACATTG GCAAGAAAAT ATTGGTATTT ATTGCGGGAT TTTGTCTCCC CGCGGTAGTA
ATTGTCTCCT ATTGTCTTGG GTGTTGGTAC GACCATCGCG TCGAGCTATT ACGTCAAGAC
AGTGCTAACC GTGAGCTTGC TAATATCCAA CAGCAGTTTC AAATTGATGT CGATCGCTTA
ACCTTTCTCA CGAATATCTA CGCTTTACCT TTGTCGCAGT TAGATGAAGA GCAACTTAAG
AAACTAGAAT CCTCGTGGCA CGACAGTTCT ATGTCGGCCA ACCTCAGTTG GTATATTTTA
CGCCAAGGCG AGCTGCACAC TTTTTTCCCC AATGCACATC CTTTTGCCTC TGATAAGTTA
CATGAAATCG CCAGCGCCAT CATCAATGCT AATAAACCCA GTGTGGCAGG CGCTTATTTG
ATTGGCGAGC AGACTTATGT CATCACCGCG GTGGCCTCTG CGCCGAATGA GTCTGTGCTG
CTAGTGCGCC AGTTGACCAA TAATGACTTA CTAGAGTATG CGCAGGCCTT ATTAGTGACT
AAGGTGACTA TGAGTCACTC TAACGCTGTC ACGGCAAGTG TTGAGGGCGT TCATCGTGAC
ACCATTGAAA TACCCAGCCT GTTAAAAGAC AAACCTGTTT ACCTGCAAGT GCAGTTCTCC
GAGGGGCCCT TCCAAGAGGT GAAGTTTAAG CTCGATTGGG TATCGCTCGG TTTTATTCTT
TTTGGCGTAT TTATTGTTGG CCTTGGCTAT ATTTGGCTGC GCTCTGGTTT ACTCAAACCC
TTTAAAAATT TGATGCGGCA ATTGGCGCTG GTCGATCCTA TGTCCAGTGT CTATCAACCT
GTCACCAGTG AGGGTAATGA GGAATTAGAA GTGCTTGCCA GCCGCGTTAA TAGCTTGCTG
GCCAGAATTT ATCAACAGAA AGAACGCGCG AAAATCACCT TAGAATCTAT TGCAGAAGCG
GTGATTTTAA CCGACGTCGA TGCCAAAGTG ATTTATATGA ATCCGCGGGC CGAGTCGCTT
CTGGATGTCG CCAGTTGTTA TGCCCTAGAT CAGAGCCTCG CGAGCCTGTT AAAGGCTGGC
GATCAGTTGA ATCAGGCGGT CTTCACTTGT ATTCGTCTTG GCGAATCATC ACCACAGGTC
GAGAAAATCA AGCTATTAAC TGCTTCGCCT CGGATTATGG AGCGCAGTAT CAGCAATCTG
CGCAATCACG ATAAAGAAAT TGTTGGTACT GTCGTGGTAT TGCGGGATAT CACTCAAGAA
GAGTTACTTA AGCGCCAACT CCAAAAAAGA GCCAATTTCG ACAGCATTAC TGGGCTGCTA
AATCGTCAGG CGTTTGATGA ACAGCTTCCT CAATTTGCCG CCTCAGCTAA AACCATCGCC
GTTTGTTATC TCGATTTGGA GCAATTCAAG TTGATTAACG ACAGCTGTGG CCATACTGCA
GGCGATCGTA TGCTCGCTAT GGTGGCTAAG GCTATGCAGG CTTGTCTTGG GCCACAGGAG
CTGTTGGCGC GCCTTGGTGG CGATGAGTTC GGTTTAGTGA TTTGTAATCG CAGTGCTTTA
TCTGTGGCGC AATTACTCAA ACAAATGATC GCACAAGTCT CGCTGCAAGT GCTGAATGAC
AAAAACTGTA ACTATAAAGT CGGCCTCAGC ATAGGTGTCG CCTTTGGTCG TGCGCCCTAT
ATTGATGCAC AAGAATTATT GAAAGACGCG GATATTGCCT GCATTGCCGC TAAAGCTAAG
GGCGCCAATC AAATTCATTT TTACGATGAT AAAGATAAAG AGCTCACTTA CCAGAGAAAT
GCGCCTAAGT GGGCGGTACG TATCGCGCAG GCGATTGAAG AAAACGAGCT AATTCTGTAT
TACCAACCGA TCCGTGGGTT AGGCAGTGGT CCGCAGCGAC AACGCATGGA AATCCTGCTG
CGAATTCAAG AACCCTGTGG CCGTATTTTG GCGCCTGCGC AGTTTATTGC CGCGGCTGAG
CGCTTTAAGC TGATGCCGGA CATAGATAAA GAAGTGATCC GCAAAGCCTT TTTATGGTTA
TCTTTGCACC CGGTGCTTTG GCCTGATCAC TGTATTTCGA TCAACCTTTC GGGCAATAGT
TTAGGCGCCG AAGGTATGGT GGAATATATC GCCCAGCAGC AGCATATTTT TGATATTCCA
AGTCAATGTA TTTGCTTTGA AATTACTGAA ACCACCGCGA TCCAAAATCG CAATCGTGGT
ATGGAAATGT TGAAGCAGTT ACGTAAGCTC GGTTTCTCGT TTGCCTTGGA TGATTTTGGT
AGTGGTTTCG CCTCTTACGG CTATCTGCGT GAATTACCTG TCGATTATGT CAAAATCGAT
GGCTGTTTTA TTAAGAATCT TGCCGTGAAC GCCAAAGACT ACGCCATCGT TAAATCGATT
CAAGATGTAT GTCGGGTCAT GGGGATCGAG ACCGTGGCCG AGTTTGTTGA AAATCAGGAT
ATTATCGACA GATTGTTGAG CATCGGGATT AACTACGCGC AAGGTTATGC GATAGGGCGC
CCACAACCCT TAGCGAATTA TCGTGAACAA TATGAGATGA GGCTTGCACA ACGCGCGTGA
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| Protein sequence | MHIGKKILVF IAGFCLPAVV IVSYCLGCWY DHRVELLRQD SANRELANIQ QQFQIDVDRL
TFLTNIYALP LSQLDEEQLK KLESSWHDSS MSANLSWYIL RQGELHTFFP NAHPFASDKL
HEIASAIINA NKPSVAGAYL IGEQTYVITA VASAPNESVL LVRQLTNNDL LEYAQALLVT
KVTMSHSNAV TASVEGVHRD TIEIPSLLKD KPVYLQVQFS EGPFQEVKFK LDWVSLGFIL
FGVFIVGLGY IWLRSGLLKP FKNLMRQLAL VDPMSSVYQP VTSEGNEELE VLASRVNSLL
ARIYQQKERA KITLESIAEA VILTDVDAKV IYMNPRAESL LDVASCYALD QSLASLLKAG
DQLNQAVFTC IRLGESSPQV EKIKLLTASP RIMERSISNL RNHDKEIVGT VVVLRDITQE
ELLKRQLQKR ANFDSITGLL NRQAFDEQLP QFAASAKTIA VCYLDLEQFK LINDSCGHTA
GDRMLAMVAK AMQACLGPQE LLARLGGDEF GLVICNRSAL SVAQLLKQMI AQVSLQVLND
KNCNYKVGLS IGVAFGRAPY IDAQELLKDA DIACIAAKAK GANQIHFYDD KDKELTYQRN
APKWAVRIAQ AIEENELILY YQPIRGLGSG PQRQRMEILL RIQEPCGRIL APAQFIAAAE
RFKLMPDIDK EVIRKAFLWL SLHPVLWPDH CISINLSGNS LGAEGMVEYI AQQQHIFDIP
SQCICFEITE TTAIQNRNRG MEMLKQLRKL GFSFALDDFG SGFASYGYLR ELPVDYVKID
GCFIKNLAVN AKDYAIVKSI QDVCRVMGIE TVAEFVENQD IIDRLLSIGI NYAQGYAIGR
PQPLANYREQ YEMRLAQRA
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