Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_3546 |
Symbol | prfA |
ID | 7088659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 4208605 |
End bp | 4209696 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 643462430 |
Product | peptide chain release factor 1 |
Protein accession | YP_002359451 |
Protein GI | 217974700 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0216] Protein chain release factor A |
TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00646422 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000410243 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGGAAT CCGTTATCCG CAAGCTGGAA GGCTTGCTCG AGCGCAATGA AGAAGTCATG GCTTTGCTGG GTGATGCTAG CGTCATTTCT GATCAAGACA GGTTTCGCGC GTTATCGAAA GAATATGCCC AGTTAGAAGA TGTTGTTGCT GGCTTTAAAG CTTATCAGCA AGCGCAGGTC GATCTCGATT CTGCCAAAGA AATGCTGGAA GAAGACGATG CTGAAATGCG CGAAATGGCA CAGGAAGAGA TGAAAGCCGC TAAGGCTAAG CTCGAACATC TTGAAGATGA ACTGCAAATT CTATTACTGC CAAAAGATCC TGACGACGAT AAAAACGCTT TCGTTGAGAT CCGTGCGGGT GCAGGCGGCG ATGAAGCGGC CATTTTTGCA GGTGACTTAT TCCGCATGTA CAGCCGTTAT GCCGAAGCAA ATCGCTGGCA GATCGAAATC ATGAGCTGTA ACGAAGGCGA ACATGGTGGC TTCAAAGAAG TGATCATGAA GGTGAGTGGC GACGGCGTAT ACGGCAAACT TAAGTTTGAG TCTGGCGGTC ACCGCGTACA ACGTGTGCCA GAAACCGAAT CTCAAGGCCG TGTGCATACT TCAGCGGTTA CTGTGGTTGT ATTACATGAA GTGCCTGAAG CAGAAGCGAT TTCAATCAAT CCAGCCGATC TGAAAGTTGA TACTTTCCGT TCATCGGGCG CGGGTGGTCA GCACGTTAAC AAAACCGATT CTGCCATTCG TATTACCCAC ATTCCAACAG GGATCGTGGT GGAATGCCAA GATCAACGTT CGCAACATAA GAACCGTGCC CAAGCCATGA GTGTACTGGC CGCACGTATT CAAGCTCTTG AAGATGAAAA ACGCCGTAGC GCCGAAGAAT CGACCCGTCG TAGTCTGGTT GCCAGTGGCG ATCGCTCCGA ACGTGTGCGT ACTTACAACT TCCCGCAAGG CCGCGTGAGC GAACACCGCA TCAACTTGAC CTTATATCGC TTGAACGAAG TGATGGAAGG CGATCTCGAT GCTATTTTAT TGCCTCTGAT GCAAGAGCAT CAAGCCGATC AGTTAGCCGC ACTGGCTGAC GAGCAGGGGT AG
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Protein sequence | MKESVIRKLE GLLERNEEVM ALLGDASVIS DQDRFRALSK EYAQLEDVVA GFKAYQQAQV DLDSAKEMLE EDDAEMREMA QEEMKAAKAK LEHLEDELQI LLLPKDPDDD KNAFVEIRAG AGGDEAAIFA GDLFRMYSRY AEANRWQIEI MSCNEGEHGG FKEVIMKVSG DGVYGKLKFE SGGHRVQRVP ETESQGRVHT SAVTVVVLHE VPEAEAISIN PADLKVDTFR SSGAGGQHVN KTDSAIRITH IPTGIVVECQ DQRSQHKNRA QAMSVLAARI QALEDEKRRS AEESTRRSLV ASGDRSERVR TYNFPQGRVS EHRINLTLYR LNEVMEGDLD AILLPLMQEH QADQLAALAD EQG
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