| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3272 |
|---|
| Symbol | |
|---|
| ID | 7087653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3890404 |
|---|
| End bp | 3891378 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643462158 |
|---|
| Product | pseudouridine synthase, RluA family |
|---|
| Protein accession | YP_002359179 |
|---|
| Protein GI | 217974428 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000267118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0414307 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATTTCGGCAA CACAAACTGG ACTGAGATTA
GATCAGGCCC TAGCAGAGTT GTTCCCAGAT TACTCGCGCA CGCGCATCAA GGAATGGATC
CTATCTGATG CAGTTCACGT TGACGGCGTT GTCGTTAATA AGCCCCGCGA GAAAGTTTAT
GAGCTGCAAC AGATACTCAT AGACGCCACT CTCGAAGAAG AAGTCCATGC CGCGGCGCAG
GCCATTGATC TGGATATCGT CTATGAAGAT GACGACATCA TCGTGATCAA CAAGCAAGCT
GGATTGGTGG TTCACCCTGG TGCTGGCAAT GCCGATGGCA CTTTGATGAA TGCACTATTG
CACCATTGTC CTGATATTGA GCATGTGCCA CGTGCAGGTA TTGTGCATCG TCTGGACAAA
GATACAACAG GTTTGATGGT CGTTGCCAAA ACCGTTGAAG CGCAAACGCA TTTAGTTGCC
GCTTTGCAGG CCCGTGAAAT CACTCGTGAA TACGAAGCGA TTGTTATGGG TACTATGACT
GGTGGCGGTA CTGTGGATGA GCCGATTGGT CGCCATCTTA CCAAACGTAC TCACATGGCC
GTGCTGCACT CAGGTAAACC TGCGGTGACG CATTACCGTG TCGCGGAAAA ATTCCGTAAC
CACACACGTC TGAGATTACG TCTAGAATCT GGCCGTACTC ACCAGATCCG TGTGCACATG
GAATACATAG GCCACGTGTT AGTGGGCGAT CCTGTGTATG GTGGTCGTCC AAAACCGCCT
AAAGCCGCGA GCCCAGAGTT TTTCGATATC CTGAAAAACT TCAAGCGCCA AGCGCTGCAC
GCAGTTCGTC TAGAATTAGC TCACCCAGTG AGTTGTGAAA TCATGAGCTG GCAAGCGCCA
ATTCCTGAAG ACATGGTGAT TTTGACTAAA GCACTGCGTC AAGACACGGT AGAGCATCCG
ATCGAGTATC TCTAA
|
|---|
| Protein sequence | MTQEINLKSE ISATQTGLRL DQALAELFPD YSRTRIKEWI LSDAVHVDGV VVNKPREKVY
ELQQILIDAT LEEEVHAAAQ AIDLDIVYED DDIIVINKQA GLVVHPGAGN ADGTLMNALL
HHCPDIEHVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQAREITRE YEAIVMGTMT
GGGTVDEPIG RHLTKRTHMA VLHSGKPAVT HYRVAEKFRN HTRLRLRLES GRTHQIRVHM
EYIGHVLVGD PVYGGRPKPP KAASPEFFDI LKNFKRQALH AVRLELAHPV SCEIMSWQAP
IPEDMVILTK ALRQDTVEHP IEYL
|
|---|
| |