Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_3192 |
Symbol | |
ID | 7085805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 3784712 |
End bp | 3785812 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 643462076 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_002359100 |
Protein GI | 217974349 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.683038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00622676 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAGCTAT TTAATAAGAT GACCACTCTA GCTCTGGTCA CTGCGAGCGT ATTAGCGAGC GCAGCGGCCC AAGCGGAAGA AGTGGTTCGC GTGTATAACT GGTCAGATTA TATCGCGGAA GATACCTTAG ACAACTTCAA GAAAGAAACG GGCATTCGGG TAATTTACGA TGTGTTCGAT AGTAACGAAG TACTTGAGGC TAAATTACTG TCTGGTCGTA GTGGCTACGA TATCGTTGTC CCTTCTAACC ACTTTCTCGC TAAGCAAATC AAAGCGGGTG CTTTCAAACC TTTAGATCGC GCTAAGCTAC CTAACTTCAA AAATTTAAAT CCTGCCCTGA TGAAGCTACT TGAGAAAGCC GATCCGGGTA ACCAGTATGC CGTGCCTTAT TTATGGGGAA CCAATGGTAT TGGTTACAAC ATAGATAAAG TGAAAGCGGC TGTGGGTGAA GATGCGCCAT TCAACTCAAT GGAACTGATC TTCAATCCTA AATATGCTGA AAAAATCTCT AAGTGTGGCT TTGCTATGCT GGACTCTGCC GACGATATGG TGCCTCAAGC ACTGATTTAT TTAGGTTTAG ATCCTAACAG CGCCAACCCA AGCGATTATG AAAAAGCTGG TGAGTTACTG GAAAAAATCC GTCCTTACGT GACCTATTTC CACTCATCTC GCTATATTTC CGACTTAGCA AACGGTGACA TTTGTGTGGC CTTTGGTTTC TCTGGCGACG TATTCCAAGC TAAAGCACGT GCTGAAGAGG CGGGTAATGG CAATAAGATT GGTTACTCGA TTCCAAAAGA AGGCGCCAAC CTGTGGTTTG ATATGTTAGC TATCCCAGCC GATTCGACTA ACGCAGATAA TGCACTGACG CTGATTAACT ATTTTCTCCG TCCAGAAGTC ATAGCGCCTA TCTCTAACTA TGTGGCCTAT GCTAACCCGA ACGATCCTGC CCAACCTCTG GTTGATGAGG CTATCCGCAC CGATCCCGCG ATTTATCCAC CACAAGAAGT GTTAGATAAA CTTTATATTG GTGAAATCCG TCCTTTGAAA ATCCAACGCG TATTAACCCG TGTTTGGACC AAAGTGAAGT CAGGACAATA G
|
Protein sequence | MKLFNKMTTL ALVTASVLAS AAAQAEEVVR VYNWSDYIAE DTLDNFKKET GIRVIYDVFD SNEVLEAKLL SGRSGYDIVV PSNHFLAKQI KAGAFKPLDR AKLPNFKNLN PALMKLLEKA DPGNQYAVPY LWGTNGIGYN IDKVKAAVGE DAPFNSMELI FNPKYAEKIS KCGFAMLDSA DDMVPQALIY LGLDPNSANP SDYEKAGELL EKIRPYVTYF HSSRYISDLA NGDICVAFGF SGDVFQAKAR AEEAGNGNKI GYSIPKEGAN LWFDMLAIPA DSTNADNALT LINYFLRPEV IAPISNYVAY ANPNDPAQPL VDEAIRTDPA IYPPQEVLDK LYIGEIRPLK IQRVLTRVWT KVKSGQ
|
| |