| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3169 |
|---|
| Symbol | |
|---|
| ID | 7085782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 3748524 |
|---|
| End bp | 3750359 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 643462053 |
|---|
| Product | RNA polymerase, sigma 70 subunit, RpoD |
|---|
| Protein accession | YP_002359077 |
|---|
| Protein GI | 217974326 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.148528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.341399 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCATA CTCCGCAGTC GCAACTTAAG CTGTTGCTTG CCAAAGGTAA AGAGCAAGGT
TACTTAACCT ATGCAGAAGT GAACGATCAC TTACCTGCAG ACATGGTCGA TTCTGACCAG
ATCGAAGATA TTATCCAGAT GATAAATGAC ATGGGTATCC GGGTGTTCGA AGAAGCCCCA
GATGCTGATG ACATGATGAT GTCGGAAGAC AACACAGACG AAGATGCCGC TGAAGAAGCC
GCTGCCGCAC TGGCAACAGT AGAAAGCGAA CTTGGCCGCA CAACCGATCC CGTGCGCATG
TACATGCGTG AAATGGGTAC CGTTGAGCTT CTGACCCGCG AAGGCGAAAT TGTTATCGCC
AAACGCATCG AAGAAGGCAT CAACACAGTT CAAAGTTCAG TCGCCGAATA CCCACAAGCG
ATCGCTATGA TCCTTGAGCA ATTCGACCAA TTTGAAGCCG ACGAACTGCG CTTATCTGAT
ATTATCTCTG GATTTGTTAA CCCGGACGAA GACGTTGCAC CGACCGCCAC TCACATCGGC
TCAGAATTAT CTGAAGAAGA GCTGGAAGAT GAAGATGACG AAGAAGATGA CGACGACACT
GAAGATGAAG AAGAAGGCAA CAAAGGGCCT GATCCTGAAG AAGCACGCGA AAGATTCGGT
CAACTGAGAA CTGCCTACGA AAGTGCACTG AAAATTATCG ATGCTAAGGG CCGTGAACAC
CCTGAATCGG TAAAAGCGCT ATTCGAAATT GGTGAAATCT TCAAAGAATT CCGCTTAGTA
CCTAAACAGT TTGACCGTTT AGTGAAAAGC ATGCGCACTA TGATGGATCG CGTACGTGTT
CAAGAACGTT TAGTGTTAAA ACTGTGCGTT GAACAAGCCA AAATGCCGAA GAAAAACTTC
GTCAAATTCT TCACTGGCAA CGAAACCAAC CTCGATTGGT TCAACACTGA GAAAGCCTCA
ACTAAACCTT ATGCCGAAGG CCTAAGAATG GTTGAAGACG ACGTGATCCG TTGTCGCACC
AAGCTTGCTG CAGTTGAAGA AGAAACCGGC TTAGCGATTT CTGCCATTAA AGACATCAAC
CGTCGTATGT CAATCGGTGA AGCCAAAGCC CGCCGTGCGA AGAAAGAAAT GGTTGAAGCA
AACTTACGTC TGGTAATTTC TATCGCGAAG AAATACACCA ACCGTGGTCT GCAATTCTTG
GACTTAATCC AAGAAGGTAA CATTGGCTTG ATGAAGGCCG TGGATAAATT TGAATACCGT
CGTGGCTATA AGTTCTCGAC CTATGCAACT TGGTGGATCC GTCAGGCGAT TACTCGTTCT
ATTGCTGACC AAGCGCGTAC CATTCGTATT CCAGTACACA TGATCGAAAC GATCAACAAG
CTGAACCGTA TCTCTCGCCA AATGCTACAG GAAATGGGCC GAGAGCCTTC ACCTGAAGAA
TTGGCTGAGC GTATGATGAT GCCGGAAGAT AAGATCCGTA AGGTACTGAA AATCGCTAAA
GAACCTATCT CCATGGAAAC CCCAATCGGT GACGATGAAG ATTCGCATTT AGGTGATTTT
ATCGAGGATA CTACCCTCGA ATTACCACTG GATTCAGCGA CCAGCGAAAG CTTGAAGAAC
GCCACTCACG AAGTGTTAGC AGGTCTAACC GCCCGTGAAG CGAAAGTACT GCGTATGCGT
TTTGGTATCG ATATGAACAC TGACCACACA CTTGAAGAAG TGGGTAAGCA GTTCGACGTA
ACCCGTGAAC GTATTCGTCA GATTGAAGCT AAGGCACTGC GCAAACTGCG TCACCCTTCA
CGCTCAGAAA TCTTAAAATC ATTCCTAGAT GAATAG
|
|---|
| Protein sequence | MDHTPQSQLK LLLAKGKEQG YLTYAEVNDH LPADMVDSDQ IEDIIQMIND MGIRVFEEAP
DADDMMMSED NTDEDAAEEA AAALATVESE LGRTTDPVRM YMREMGTVEL LTREGEIVIA
KRIEEGINTV QSSVAEYPQA IAMILEQFDQ FEADELRLSD IISGFVNPDE DVAPTATHIG
SELSEEELED EDDEEDDDDT EDEEEGNKGP DPEEARERFG QLRTAYESAL KIIDAKGREH
PESVKALFEI GEIFKEFRLV PKQFDRLVKS MRTMMDRVRV QERLVLKLCV EQAKMPKKNF
VKFFTGNETN LDWFNTEKAS TKPYAEGLRM VEDDVIRCRT KLAAVEEETG LAISAIKDIN
RRMSIGEAKA RRAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL MKAVDKFEYR
RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK LNRISRQMLQ EMGREPSPEE
LAERMMMPED KIRKVLKIAK EPISMETPIG DDEDSHLGDF IEDTTLELPL DSATSESLKN
ATHEVLAGLT AREAKVLRMR FGIDMNTDHT LEEVGKQFDV TRERIRQIEA KALRKLRHPS
RSEILKSFLD E
|
|---|
| |