Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_2905 |
Symbol | dapD |
ID | 7089474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 3415759 |
End bp | 3416583 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 643461790 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_002358814 |
Protein GI | 217974063 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.385755 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.516025 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGCTT TACGCCAACG TATTGAGGCG GCTTTTGAAG CTCGCGCCGA CATCACGCCA AGCACAGTTG ACGCCAGCGT GCGTGACGAT GTGCAAAATG TCATCAATAT GCTCGACAAA GGTGAAGTCC GTGTCGCCGA GAAAATCGAC GGACAATGGC ATGTACACCA ATGGCTGAAA AAGGCGGTAT TACTGTCCTT CCGTATTTTC GATAACGTGG TTATCGATGG CGCCGAAACC AAATACTTCG ACAAAGTGCC GTTAAAATTT GCCGAATATG ATGAAGCTCG CTTTAAAGCG GAAGCCATTC GCGTGGTGCC TTCGGCTACA GTGCGTAAAG GCTCATTCAT AGGTAAAAAT ACCGTGTTGA TGCCATCTTA TGTGAACTTA GGTGCCTATG TAGATGAAGG CACTATGGTT GATACTTGGG CGACCGTTGG CTCATGTGCA CAAATCGGTA AAAATGTGCA TTTATCTGGC GGCGTAGGTA TTGGTGGCGT ACTTGAGCCA TTACAAGCGG GCCCAACCAT CATCGAAGAT AACTGCTTTA TCGGTGCACG TTCTGAGATT GTTGAAGGCG TTGTGGTTGA AGAAGGCTCA GTGATTTCTA TGGGCGTGTA TATCGGCCAA AGCACTCGAA TTTATGATCG CGAAACTGGC GAAGTGCATT ACGGTCGTGT ACCAGCAGGT TCCGTTGTCG TTTCTGGCAA CCTGCCCTCT GCCTGTGGCA AGTACAGCCT CTATGCCGCC ATTATCGTTA AGAAAGTGGA TGCAAAAACC CGCGGTAAAG TGGGTATCAA CGAATTACTA CGTATTGTTG ATTAA
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Protein sequence | MEALRQRIEA AFEARADITP STVDASVRDD VQNVINMLDK GEVRVAEKID GQWHVHQWLK KAVLLSFRIF DNVVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS ACGKYSLYAA IIVKKVDAKT RGKVGINELL RIVD
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