| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_2447 |
|---|
| Symbol | |
|---|
| ID | 7089410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 2920974 |
|---|
| End bp | 2921678 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643461340 |
|---|
| Product | sortase family protein |
|---|
| Protein accession | YP_002358364 |
|---|
| Protein GI | 217973613 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00927712 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG GCAGAACGCA GCGATTTTTA GTGGTGGGAT TATTTTTAAT TGGCGCAACA
TTGTTAGGAA AGGGACTCTA TATGCAAGCT AAAGCACACT TTGCCCAGTA TTTGATTGAA
CAGGCGTGGA CTAAAACCTT AGCCGATGGA CAATCTCATA AGCCTTGGTC ATGGGCGGAT
ACTTACCCCG TGGCAAAGCT GTCCATTTAT CGTGAACAAG CGGCTAACAA CGATATTGAA
GCCGAGCTTA ATGACAGTTT ATATGTGTTG GCGGGGGCTT CTGGGCGAAA TTTGGCCTTT
GGTCCGAGTC TGGTATTGTC CAGCGCGCCA GCGGGGCAAA AGGGCAATAC TGTGATTGCC
GGTCACAGGG ACACACATTT TGCGATCCTC AATGGCATGG CGGTGGGGCG TCGATTATCG
TTGCAGACGC TTAATGGAAA TCACATTATT TATGAAGTAG TTGCGACTCA GGTGGTGCAT
GAAACTGAAA CGCAGTTTAT GGCGCCATCC GATGATAATC GCTTAACCTT AATCACTTGT
TATCCCTTCG ATGCGCTTCA AGGCGGCGCC GAACTGCGCT TTGTGGTGCA GGCGATACCA
GTTGAGGATG AATCAATGGA TACGGTTAGT GCCGATGTTT CAGCTTCAGC TGGGAATGGG
ATGCAAGGGA AGGTCACTTC TGTATCGCGC AGTTTCACCC ATTAG
|
|---|
| Protein sequence | MSKGRTQRFL VVGLFLIGAT LLGKGLYMQA KAHFAQYLIE QAWTKTLADG QSHKPWSWAD
TYPVAKLSIY REQAANNDIE AELNDSLYVL AGASGRNLAF GPSLVLSSAP AGQKGNTVIA
GHRDTHFAIL NGMAVGRRLS LQTLNGNHII YEVVATQVVH ETETQFMAPS DDNRLTLITC
YPFDALQGGA ELRFVVQAIP VEDESMDTVS ADVSASAGNG MQGKVTSVSR SFTH
|
|---|
| |