Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_1669 |
Symbol | |
ID | 7086275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 1950036 |
End bp | 1950911 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643460570 |
Product | RNA-binding S4 domain protein |
Protein accession | YP_002357597 |
Protein GI | 217972846 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00289659 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000456402 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGAAA AGTTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG GAGGCATGGA TTGCTGCAGG CCGAGTTAGT ATTGATGGTG AAATTGCTAG CCTTGGGGAT CGGATTGAAG CCGATGCCAA AGTGCGTATC GATGGCAGAG CCATTTCGTT AAAGTCTGCC GAAGACGTGA TCTGTCGAGT ATTGGCATAC CATAAACCCG AAGGCGAAAT TTGTAGTCGT AAAGATCCTG AAGGCCGTCC AACGGTATTC GATCGCTTAC CTAAAGTGCG TGATTCACGC TGGGTTGCGG TTGGTCGTTT AGACATCAAC ACCTCAGGTT TATTACTGTT TACCTCAGAT GGTGAATTAG CGAACCGCTT AATGCATCCA TCGAACGAAG TCGACCGCGA ATACGCAGTG CGTACCTTCG GTGAAATCCC TGAAGCGACA GTGCAACGTT TGCGTACCGG TGTGATGTTA GAAGACGGCC CTGCGCAGTT TGATAGCATC AAGCCAGCGG GCGGCGAAGG CATGAACCAG TGGTGGCATG TGTGTTTACG CGAAGGTCGT AACCGTGAAG TGCGTCGTCT GTGGGAATCC CAAGAAGTGC AAGTGAGCCG TTTGATCCGT ATCCGTTACG GTATGGTTGA ATTGCCAAAA TCACTGCCAC GGGGTGGCTG GGTTGAATTG CCAATGGAGC AAGTTAACTA CTTGCGTAAA CTGGCAGGTT TAGAGCCTGA AACCCGCACT ATGCTTGCTG CAGATAAACA CAGCGTAGCC CGTGCACAGG TGAAGAGTGC CAAAATTCGC CGCGCTGTGC GTAAGCATAA AGTGACAGGA TCGGGAAAAC CTAAGCCATC GCGTCAGCGC AGCTAA
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Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRVS IDGEIASLGD RIEADAKVRI DGRAISLKSA EDVICRVLAY HKPEGEICSR KDPEGRPTVF DRLPKVRDSR WVAVGRLDIN TSGLLLFTSD GELANRLMHP SNEVDREYAV RTFGEIPEAT VQRLRTGVML EDGPAQFDSI KPAGGEGMNQ WWHVCLREGR NREVRRLWES QEVQVSRLIR IRYGMVELPK SLPRGGWVEL PMEQVNYLRK LAGLEPETRT MLAADKHSVA RAQVKSAKIR RAVRKHKVTG SGKPKPSRQR S
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