Gene Sbal223_1669 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal223_1669 
Symbol 
ID7086275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS223 
KingdomBacteria 
Replicon accessionNC_011663 
Strand
Start bp1950036 
End bp1950911 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content51% 
IMG OID643460570 
ProductRNA-binding S4 domain protein 
Protein accessionYP_002357597 
Protein GI217972846 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00289659 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000456402 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTGAAA AGTTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG 
GAGGCATGGA TTGCTGCAGG CCGAGTTAGT ATTGATGGTG AAATTGCTAG CCTTGGGGAT
CGGATTGAAG CCGATGCCAA AGTGCGTATC GATGGCAGAG CCATTTCGTT AAAGTCTGCC
GAAGACGTGA TCTGTCGAGT ATTGGCATAC CATAAACCCG AAGGCGAAAT TTGTAGTCGT
AAAGATCCTG AAGGCCGTCC AACGGTATTC GATCGCTTAC CTAAAGTGCG TGATTCACGC
TGGGTTGCGG TTGGTCGTTT AGACATCAAC ACCTCAGGTT TATTACTGTT TACCTCAGAT
GGTGAATTAG CGAACCGCTT AATGCATCCA TCGAACGAAG TCGACCGCGA ATACGCAGTG
CGTACCTTCG GTGAAATCCC TGAAGCGACA GTGCAACGTT TGCGTACCGG TGTGATGTTA
GAAGACGGCC CTGCGCAGTT TGATAGCATC AAGCCAGCGG GCGGCGAAGG CATGAACCAG
TGGTGGCATG TGTGTTTACG CGAAGGTCGT AACCGTGAAG TGCGTCGTCT GTGGGAATCC
CAAGAAGTGC AAGTGAGCCG TTTGATCCGT ATCCGTTACG GTATGGTTGA ATTGCCAAAA
TCACTGCCAC GGGGTGGCTG GGTTGAATTG CCAATGGAGC AAGTTAACTA CTTGCGTAAA
CTGGCAGGTT TAGAGCCTGA AACCCGCACT ATGCTTGCTG CAGATAAACA CAGCGTAGCC
CGTGCACAGG TGAAGAGTGC CAAAATTCGC CGCGCTGTGC GTAAGCATAA AGTGACAGGA
TCGGGAAAAC CTAAGCCATC GCGTCAGCGC AGCTAA
 
Protein sequence
MSEKLQKVLA RAGHGSRREM EAWIAAGRVS IDGEIASLGD RIEADAKVRI DGRAISLKSA 
EDVICRVLAY HKPEGEICSR KDPEGRPTVF DRLPKVRDSR WVAVGRLDIN TSGLLLFTSD
GELANRLMHP SNEVDREYAV RTFGEIPEAT VQRLRTGVML EDGPAQFDSI KPAGGEGMNQ
WWHVCLREGR NREVRRLWES QEVQVSRLIR IRYGMVELPK SLPRGGWVEL PMEQVNYLRK
LAGLEPETRT MLAADKHSVA RAQVKSAKIR RAVRKHKVTG SGKPKPSRQR S