Gene Sbal223_1612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal223_1612 
Symbol 
ID7090013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS223 
KingdomBacteria 
Replicon accessionNC_011663 
Strand
Start bp1886679 
End bp1888805 
Gene Length2127 bp 
Protein Length708 aa 
Translation table11 
GC content50% 
IMG OID643460513 
ProducttRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC 
Protein accessionYP_002357540 
Protein GI217972789 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID[TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.12918e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACTGCAG AGCCCAATAA ACCTTGCCAA ATTAAGCGTG ATTACCAGCA ATTAATCAAC 
CTTTATCCCG CAACAGCTGA CACTGATGCA CACTATCTCA GCAAGTTGAG CATTTATCAG
CAGCGGGTAT TTGAGGCTCA TTCACAGCAA AAACTCTTAG TATTAGGCCA AATTGGTTTA
GGTAACGGGC TTGAACTCTT ATCTTGGTGG CGCACTCAGG CGAATCCTAG CCAACGTTTA
CTCCTTAAGG TGTTCGAACC CAATCCGATT AATGCATACG AACTTAAATC ACTTTGGGAT
CAATCACTCA CTCTTGTGAA AGAAACCCCA TTCGAGCCAC ATCTTGAATC AAAGCAAGCG
TCAGCGTTGG AGTGTAAATC TAAGCTCAGC CAGCTTGCTC AAACCTTACT CGATGCTGAG
CCGACGGCTA TTATAGGTTG CCAGAGATTA ATTTTTGATG ACGGTCGTAC CACTATCGAC
CTGCACTTTG GTGATATTCA AACCCAGCTC AGTTCACTCA GCCATTCGCC AATGCATCCG
GTTCAACACT GGTTGATATT GCCTCACCTG CTACAGGCGC TACATCATCA AAGCCACTGG
CAGATGGCAA AACTCAGTGA CGATAGCGCG ACCATTGCCA CGATTGGATT AAGCGAATCA
AGCGGATTAA GCGAAACAAC AGTCAACCGT TTCCAAGCCT GTGGCTTTAC TGTGAGCGAT
ATCAATAAAC TTGCTACCAA AGCTCTGGGT ATCCATCAGC CAGTCACACT GATTAACCAC
CAGCTTGATA CCGTACTGCT ACACGAGCGC CAAGTCCTAC GTCAGCAAGA CGCTAAAGCC
TATGCTTTTA ATCCTATGGC TGCAATCTTA TCCTCGGCGA CGCAAAGCTC AATTGCCATC
ATAGGCGGCG GCTTAGCCTC AGCGCATTTG GCGCTGTCTT TGGCTGAGCG CGGCCAAGGT
GCACAGGTAT TTTGTAAAGA TGCCGAGCTA GGCCAAGGCG CATCGGGCAA TCGCCAAGGA
GCCATTTATC CGCTGCTGAC CCCAGAAAAT GACGAGCTGA GCCGCTTTTT CCAACAAGCA
TTTTTATTTA GCCGACGTCG AGTGCAGGCG CTGACATCCG CCCCCGCCAA CAATCAGACG
CCGATTTCCC ATAATTTTTG CGGCGTATTG CAAACTGCCC ACGATGAACG CAGCCAGTTA
CGACTCGATA AAATCATTCA AGGCCAACCC TGGCCAAGTG AAATCGCCTA CGCCGTTGAT
GCTGAGCAAG CCAATGCCAT TGCCAAGATC AATCTCGATA AACCAGGTTT TTTTTATCCC
TTAGGTGGCT GGGTTTGCCC ATTTGAATAT GCCGACGCTG CGATACAAAA AGCGATGCAA
CTGGCCGATG TCAGCGTCTC GCTCAATACC GACATCCTTG CCATTGAACG CCAAGCCGAT
GGCTGGGTTT TGTTGACTGA AAAGGAACGT TTCGGGCCCT TTGCACAACT TGTACTCGCC
AATGGCGCAG AATTGACACA ATTTGATGCC AGCAACAAAT TACAAATTAG CCCCTTTCGC
GGCCAAGTCA GCCATGTGCC CGCTCAATTT CAATTGAGTC AGCTCGCAAC TGTGCTGTGC
GCCAACGGTT ATTTAACGCC GAGTCACCAA GGACTCCACT GCCTTGGCGC AAGTTACGTT
AAAGAGCCTG AACATTTAGA TTTTTGCCCG CAGGAACAAC AAGAAAACCT CATGAAAATG
CACGAGAGTT ATCCGAACCA AAGCTGGCTT GCAGATATCG ACATGAGTGA CAACAATGCC
CGCGTCGGCG TGCGTATGGT GACGCGGGAT CATTTCCCTA TGATGGGCTG CGCGCCCGAT
GTGGCGAAAA TCCTTGAGGA TTATGCGCAA CATCAACTCA CTAAAGAAAG TCGCCACTAC
TGGCAAACCA CGCCAGCACC CGTGCATCAA GGACTGTATA TTCTTGGTGG GTTAGGCTCA
CGGGGACTAA GTTCTGGGCC ACTGGCCGCC GAATGTCTTG CGGCGCAGCT TTGCGGCGAA
CCAATACCGC TCGATAAAGA AACCCTGTGT AAACTCAACC CCAATCGCAT GTGGCTGCGA
AAATTGCTCA AGGGTAAAGC GCTCTAG
 
Protein sequence
MTAEPNKPCQ IKRDYQQLIN LYPATADTDA HYLSKLSIYQ QRVFEAHSQQ KLLVLGQIGL 
GNGLELLSWW RTQANPSQRL LLKVFEPNPI NAYELKSLWD QSLTLVKETP FEPHLESKQA
SALECKSKLS QLAQTLLDAE PTAIIGCQRL IFDDGRTTID LHFGDIQTQL SSLSHSPMHP
VQHWLILPHL LQALHHQSHW QMAKLSDDSA TIATIGLSES SGLSETTVNR FQACGFTVSD
INKLATKALG IHQPVTLINH QLDTVLLHER QVLRQQDAKA YAFNPMAAIL SSATQSSIAI
IGGGLASAHL ALSLAERGQG AQVFCKDAEL GQGASGNRQG AIYPLLTPEN DELSRFFQQA
FLFSRRRVQA LTSAPANNQT PISHNFCGVL QTAHDERSQL RLDKIIQGQP WPSEIAYAVD
AEQANAIAKI NLDKPGFFYP LGGWVCPFEY ADAAIQKAMQ LADVSVSLNT DILAIERQAD
GWVLLTEKER FGPFAQLVLA NGAELTQFDA SNKLQISPFR GQVSHVPAQF QLSQLATVLC
ANGYLTPSHQ GLHCLGASYV KEPEHLDFCP QEQQENLMKM HESYPNQSWL ADIDMSDNNA
RVGVRMVTRD HFPMMGCAPD VAKILEDYAQ HQLTKESRHY WQTTPAPVHQ GLYILGGLGS
RGLSSGPLAA ECLAAQLCGE PIPLDKETLC KLNPNRMWLR KLLKGKAL