Gene Sbal223_1132 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal223_1132 
Symbol 
ID7087585 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS223 
KingdomBacteria 
Replicon accessionNC_011663 
Strand
Start bp1330280 
End bp1332334 
Gene Length2055 bp 
Protein Length684 aa 
Translation table11 
GC content46% 
IMG OID643460043 
Productdiguanylate cyclase/phosphodiesterase with extracellular sensor 
Protein accessionYP_002357070 
Protein GI217972319 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00732829 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000153183 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGACAGGCC GTTTTAAGTC ACTGACGTGG AAACAAACTA ACCTAGTCGT ATTTACTGCC 
CTATTTTTTG CCATTGCCAT TTTTATTGTT GAAATCGCTT TAGTCGTTGT CTCAACCAAA
CAACAACTCA CGACTACGCA GCAAGAACTC CTTGATTCAG TTGAACAACC CGCAGCAAAT
GCCGTCTGGG CATTGGATGA CAATTTAGCC CGTCAAACCT TAGAAGGAGC CATTAAGGTT
GAGCATGTCG GCTCGGCAGT GATCGAGCTG GACGATGGTT CCATGTTTGT GTCAGTCAGC
AATAATAAAA AGAATAACTC GCAGACATTT ATCAGCTTAA GTAACAAATT ATTTGATGAT
CTTAAAGAAA TCTCTCGCCC GCTGTACCGA CCTTTTTATT TCGAAGGCAC CCAACAACAG
CAACTTATCG GCACATTAAC GGTTTTCTAC GATACCCAAG AGCTGACAAA CACCCTTTTC
TCGCAGTTAA GATTTAGTTT TTTCGCCACG CTTGCCCGCG CACTCTTACT CACCTTAGTG
CTTTCAGTGG TTTTCCATCG TTTCTTGACT CAACCTATCG CGCGTATCAG TGAGGCCATA
GATAAGATTG AACCCGACTC ACCGGACGAA AACCTCTTAC CTATGTCCAA TGCGCATAAG
GATGATGAAC TCGGCCTAGT GACCTCGAAA TTCAACCAAA TTCTTATCCA ATTTAGCCAA
ACCCAATCAA AACTGCGCAA AATGGCGACC CGAGATCCGC TAACGGGCTT ACCGAATCGC
ACACTATTGC TCGAAACCAT CGCAGTCACT ATCCAACGTT CGCGTGTACA CAAGCGCAGC
TTTGCCTTAA TGTTTATCGA CTTAGATCGA TTTAAGAATA TTAACGATTC CCTTGGCCAC
GCATTGGGCG ATCAATTCCT CGCCCGTATC GCCCGTATTC TTGAACGCTT CGTTGGCGAT
AAAGGCACAG TCTCTCGCTT AGGTGGCGAT GAGTTTGTAA TTTTAGCCGA CACAGTACAC
ACCCCTGACC AAGCCGCTGA CTTTGTTGAT AAGTTACTGA TCCAGCTTAA TGTCCCTATC
CAATTAAATG AACATGCGAT TCATCCTGCG GCCTCAATTG GGATATCCAT TTATCCCGAA
GACGGTAACA GCGCAGAAGA TTTGATACGT CATGCCGATA TTGCCATGTA CAGCGCCAAA
GCTGCAGGTT CGAATCAATG GGCCTTCTTT AAACAGCAGA TGACAGAGCG CGCCGCTGTG
CGTTTACGCA CCGAAGCATC CTTGCATGAT GCGTTGAAAA ACAACGAATT TTTACTGTAT
TTCCAACCTA AACTCGATCT GCAAACGGGC AAAGTGATTG CCTGTGAAGC CCTGATCCGC
TGGCAAAAAG ACGGCCGACT CATCAGTCCG GTTTCTTTTA TCCCCGTCGC CGAAGAAACG
GGGATCATCA TTCCGATTGG CCGCTGGGTG ATAGAGCAAA GCTGCAAAGT CTTAAGGGAG
TGGCAGAAGA AATATAACTA TGCCATCCCG ATTGCGATTA ATGTCGCCTC ACAGCAATTC
GCCGACGCCA GTTTAGTACC CGATATCAAA CAGATGGCAT TACGTTATCA GATCCAACCC
GAACTGCTGG AAATTGAAAT CACTGAAACC TCGCTGATGA ACGACATTGA GCTCGCCATC
GCTAAGCTTG AACAACTTAA ATCAGCAGGG TTTGGTATTG CCGTCGATGA CTTCGGCACC
GGATATTCAT CACTTTCTTA CCTACGCCAT TTGCCCATTA CCACCATGAA AATCGACCGC
TGTTTCGTGT CCGATTTACC TGGGGATAGC GCAATCGCAT CGACCATTTT GATGTTGGGT
AAGCAGCTTA ATTTGACCAT TGTGGCCGAA GGAATTGAAA ACGAGCAGCA ATTGGATTGG
TTGAAGGAGA ATCAGTGCCA AGTCGGCCAA GGTTTCTATT TTAGCCAACC CCTGCCCCAA
GCGGAATTTG AAGCCCTGTA TATAGCAACA CAGACAGCAA CGATAAGCAC TCTGGATGGC
TTACGTGGAG CTTAG
 
Protein sequence
MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN 
AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD
LKEISRPLYR PFYFEGTQQQ QLIGTLTVFY DTQELTNTLF SQLRFSFFAT LARALLLTLV
LSVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH
ALGDQFLARI ARILERFVGD KGTVSRLGGD EFVILADTVH TPDQAADFVD KLLIQLNVPI
QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVIACEALIR WQKDGRLISP VSFIPVAEET
GIIIPIGRWV IEQSCKVLRE WQKKYNYAIP IAINVASQQF ADASLVPDIK QMALRYQIQP
ELLEIEITET SLMNDIELAI AKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKENQCQVGQ GFYFSQPLPQ
AEFEALYIAT QTATISTLDG LRGA