Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_1132 |
Symbol | |
ID | 7087585 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 1330280 |
End bp | 1332334 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 643460043 |
Product | diguanylate cyclase/phosphodiesterase with extracellular sensor |
Protein accession | YP_002357070 |
Protein GI | 217972319 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00732829 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000153183 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGACAGGCC GTTTTAAGTC ACTGACGTGG AAACAAACTA ACCTAGTCGT ATTTACTGCC CTATTTTTTG CCATTGCCAT TTTTATTGTT GAAATCGCTT TAGTCGTTGT CTCAACCAAA CAACAACTCA CGACTACGCA GCAAGAACTC CTTGATTCAG TTGAACAACC CGCAGCAAAT GCCGTCTGGG CATTGGATGA CAATTTAGCC CGTCAAACCT TAGAAGGAGC CATTAAGGTT GAGCATGTCG GCTCGGCAGT GATCGAGCTG GACGATGGTT CCATGTTTGT GTCAGTCAGC AATAATAAAA AGAATAACTC GCAGACATTT ATCAGCTTAA GTAACAAATT ATTTGATGAT CTTAAAGAAA TCTCTCGCCC GCTGTACCGA CCTTTTTATT TCGAAGGCAC CCAACAACAG CAACTTATCG GCACATTAAC GGTTTTCTAC GATACCCAAG AGCTGACAAA CACCCTTTTC TCGCAGTTAA GATTTAGTTT TTTCGCCACG CTTGCCCGCG CACTCTTACT CACCTTAGTG CTTTCAGTGG TTTTCCATCG TTTCTTGACT CAACCTATCG CGCGTATCAG TGAGGCCATA GATAAGATTG AACCCGACTC ACCGGACGAA AACCTCTTAC CTATGTCCAA TGCGCATAAG GATGATGAAC TCGGCCTAGT GACCTCGAAA TTCAACCAAA TTCTTATCCA ATTTAGCCAA ACCCAATCAA AACTGCGCAA AATGGCGACC CGAGATCCGC TAACGGGCTT ACCGAATCGC ACACTATTGC TCGAAACCAT CGCAGTCACT ATCCAACGTT CGCGTGTACA CAAGCGCAGC TTTGCCTTAA TGTTTATCGA CTTAGATCGA TTTAAGAATA TTAACGATTC CCTTGGCCAC GCATTGGGCG ATCAATTCCT CGCCCGTATC GCCCGTATTC TTGAACGCTT CGTTGGCGAT AAAGGCACAG TCTCTCGCTT AGGTGGCGAT GAGTTTGTAA TTTTAGCCGA CACAGTACAC ACCCCTGACC AAGCCGCTGA CTTTGTTGAT AAGTTACTGA TCCAGCTTAA TGTCCCTATC CAATTAAATG AACATGCGAT TCATCCTGCG GCCTCAATTG GGATATCCAT TTATCCCGAA GACGGTAACA GCGCAGAAGA TTTGATACGT CATGCCGATA TTGCCATGTA CAGCGCCAAA GCTGCAGGTT CGAATCAATG GGCCTTCTTT AAACAGCAGA TGACAGAGCG CGCCGCTGTG CGTTTACGCA CCGAAGCATC CTTGCATGAT GCGTTGAAAA ACAACGAATT TTTACTGTAT TTCCAACCTA AACTCGATCT GCAAACGGGC AAAGTGATTG CCTGTGAAGC CCTGATCCGC TGGCAAAAAG ACGGCCGACT CATCAGTCCG GTTTCTTTTA TCCCCGTCGC CGAAGAAACG GGGATCATCA TTCCGATTGG CCGCTGGGTG ATAGAGCAAA GCTGCAAAGT CTTAAGGGAG TGGCAGAAGA AATATAACTA TGCCATCCCG ATTGCGATTA ATGTCGCCTC ACAGCAATTC GCCGACGCCA GTTTAGTACC CGATATCAAA CAGATGGCAT TACGTTATCA GATCCAACCC GAACTGCTGG AAATTGAAAT CACTGAAACC TCGCTGATGA ACGACATTGA GCTCGCCATC GCTAAGCTTG AACAACTTAA ATCAGCAGGG TTTGGTATTG CCGTCGATGA CTTCGGCACC GGATATTCAT CACTTTCTTA CCTACGCCAT TTGCCCATTA CCACCATGAA AATCGACCGC TGTTTCGTGT CCGATTTACC TGGGGATAGC GCAATCGCAT CGACCATTTT GATGTTGGGT AAGCAGCTTA ATTTGACCAT TGTGGCCGAA GGAATTGAAA ACGAGCAGCA ATTGGATTGG TTGAAGGAGA ATCAGTGCCA AGTCGGCCAA GGTTTCTATT TTAGCCAACC CCTGCCCCAA GCGGAATTTG AAGCCCTGTA TATAGCAACA CAGACAGCAA CGATAAGCAC TCTGGATGGC TTACGTGGAG CTTAG
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Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD LKEISRPLYR PFYFEGTQQQ QLIGTLTVFY DTQELTNTLF SQLRFSFFAT LARALLLTLV LSVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH ALGDQFLARI ARILERFVGD KGTVSRLGGD EFVILADTVH TPDQAADFVD KLLIQLNVPI QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVIACEALIR WQKDGRLISP VSFIPVAEET GIIIPIGRWV IEQSCKVLRE WQKKYNYAIP IAINVASQQF ADASLVPDIK QMALRYQIQP ELLEIEITET SLMNDIELAI AKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKENQCQVGQ GFYFSQPLPQ AEFEALYIAT QTATISTLDG LRGA
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